CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH13720
KRH43737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51190.1	KRH13720	AT1G16490.1	21245844
AT1G51190.1	KRH43737	AT1G16490.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24688	Soybean	nucleus	87.63	94.76
VIT_06s0004g01800.t01	Wine grape	nucleus	71.07	77.27
Solyc11g061750.1.1	Tomato	nucleus	65.38	71.35
CDY72154	Canola	nucleus	38.96	70.82
PGSC0003DMT400035354	Potato	nucleus	65.05	70.6
CDY72251	Canola	nucleus	38.46	70.55
AT1G51190.1	Thale cress	nucleus	64.55	67.96
CDY68782	Canola	nucleus	36.79	67.9
Bra018899.1-P	Field mustard	nucleus	63.04	67.44
Bra030451.1-P	Field mustard	nucleus	63.21	67.02
CDY29623	Canola	nucleus	62.88	66.9
CDY35571	Canola	nucleus	62.71	66.61
Bra031234.1-P	Field mustard	nucleus	61.2	65.71
CDY57915	Canola	nucleus	61.87	65.6
CDY06387	Canola	nucleus	61.37	65.54
AT3G20840.1	Thale cress	nucleus	62.54	65.16
CDY19597	Canola	nucleus	61.37	62.41
Bra023921.1-P	Field mustard	nucleus	46.49	59.53
KRG99477	Soybean	nucleus	33.11	45.1
KRH47304	Soybean	nucleus	21.74	44.83
KRH45549	Soybean	nucleus	32.78	43.85
KRH39470	Soybean	nucleus	36.12	42.19
KRH74476	Soybean	nucleus	35.62	41.76
KRH44591	Soybean	plastid	21.74	41.53
Os02t0614300-01	Rice	mitochondrion, nucleus	22.07	41.12
GSMUA_Achr2P05880_001	Banana	nucleus	39.3	41.08
KRH06179	Soybean	nucleus	38.96	40.59
KRH19032	Soybean	nucleus	35.45	40.15
KRH47597	Soybean	nucleus	38.46	39.72
HORVU6Hr1G057060.3	Barley	nucleus	41.97	38.5
TraesCS6D01G205300.1	Wheat	nucleus	41.64	37.67
TraesCS6A01G229500.1	Wheat	nucleus	41.47	37.63
TraesCS6B01G252000.1	Wheat	nucleus	41.3	37.31
Zm00001d017207_P001	Maize	nucleus	42.14	37.28
KRH34229	Soybean	nucleus	35.79	37.22
Os04t0504500-01	Rice	nucleus	40.64	36.93
KXG30667	Sorghum	nucleus	42.47	36.81
KRH55024	Soybean	plastid	21.57	36.75
KRH40267	Soybean	nucleus	43.31	36.63
KRH63091	Soybean	plastid	21.24	36.6
KRH02858	Soybean	nucleus	35.12	36.4
TraesCS2D01G357600.1	Wheat	nucleus	39.63	36.18
TraesCS2B01G378100.1	Wheat	nucleus	39.8	36.06
HORVU2Hr1G087310.1	Barley	nucleus	39.63	35.96
KRH72352	Soybean	nucleus	21.91	35.89
KRH02994	Soybean	nucleus	21.91	35.41
KRH40131	Soybean	nucleus	22.58	34.44
KRH15454	Soybean	nucleus	33.95	33.89
KRG88628	Soybean	nucleus	27.42	33.81
KRH01131	Soybean	nucleus	22.07	33.67
KRH13193	Soybean	nucleus	23.08	33.5
KRH00957	Soybean	nucleus	39.13	33.0
KRH77164	Soybean	nucleus	32.94	32.03
KRH28322	Soybean	nucleus	32.78	32.03
KRG99157	Soybean	nucleus	21.74	32.02
KRH44733	Soybean	nucleus	22.74	31.92
KRH58159	Soybean	nucleus	35.28	31.73
KRH45852	Soybean	nucleus	21.57	31.7
KRH52140	Soybean	nucleus	34.78	31.52
KRH04380	Soybean	nucleus	35.45	30.99
KRH61449	Soybean	nucleus	34.28	30.92

Protein Annotations

EntrezGene:100170752	MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:ACUP02006816	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_11G131900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1LJU5	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH29690
ProteinID:KRH29690	ProteinID:KRH29690.1	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF22
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00023CC32E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:+:10110022..10113569

Molecular Weight (calculated)

66538.8 Da

IEP (calculated)

6.660

GRAVY (calculated)

-0.656

Length

598 amino acids

Sequence
(BLAST)

001: MNNNWLSFPL SPTHSSLPAH DLQATQYHQF SLGLVNENME NPFQNHDWSL INTHSSSEVP KVADFLGVSK SENESDLAAS LNEIQSNDSD YLFTNNSLVP
101: MQNPAVDTPS NEYQENANSS LQSLTLSMGS GKDSTCETSG DNSTNTTTTT TVEAAPRRTL DTFGQRTSIY RGVTRLDCHS MLSLNPIYIL YCLICCFCFR
201: SNSAYYMKIY RHRWTGRYEA HLWDNSCRRE GQSRKGRQVY LGGYDKEEKA ARSYDLAALK YWGTSTTTNF PISNYEKELD EMKHMTRQEF VAAIRRKSSG
301: FSRGASMYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST EEEAAEAYDI AAIKFRGLNA VTNFDMSRYD VKAILESNTL PIGGGAAKRL KEAQALESSR
401: KREEMIALGS STFQYGTTSS NSRLHAYPLM QHHHQFEQPQ PLLTLQNHDI SSHFSHQQDP LHQGYIQTQL QLHQQQSGGS SSYSFQNNNI NNAQFYNGYN
501: LQNHPALLQG MINMGSSSSS SVLENNNSNN NNVGGFVGSG FGMASNATSG NTVGTAEELG LVKVDYDMPT GGYGGWSAAA AAESMQTSNS GVFTMWND

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.