Factsheet for Os08t0442400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0813300-00	Rice	nucleus	22.2	73.23
Os03t0176300-00	Rice	mitochondrion	29.12	71.76
CDY33356	Canola	nucleus	31.98	69.79
KRH47304	Soybean	nucleus	46.06	66.55
TraesCS6B01G153800.1	Wheat	nucleus	49.16	61.13
Bra035137.1-P	Field mustard	nucleus	44.87	61.04
KRH44591	Soybean	plastid	45.58	61.02
CDX88560	Canola	nucleus	44.87	60.84
AT1G79700.2	Thale cress	nucleus	45.35	60.7
CDY35066	Canola	nucleus	47.49	60.3
Os09t0423800-01	Rice	nucleus	52.27	60.0
VIT_09s0018g01650.t01	Wine grape	plastid	51.55	59.83
Bra026082.1-P	Field mustard	nucleus	47.02	59.7
VIT_11s0037g00870.t01	Wine grape	plastid	48.93	59.08
CDX87360	Canola	nucleus	43.91	58.6
KRH63091	Soybean	plastid	47.73	57.64
AT1G16060.1	Thale cress	nucleus	47.02	57.1
KRH55024	Soybean	plastid	47.73	56.98
Solyc06g068570.2.1	Tomato	nucleus	42.0	55.87
Solyc03g117720.2.1	Tomato	nucleus, plastid	48.45	54.72
KRH72352	Soybean	nucleus	47.26	54.25
KRH02994	Soybean	nucleus	47.49	53.78
TraesCS6A01G125700.1	Wheat	nucleus	44.63	53.58
GSMUA_Achr5P04670_001	Banana	nucleus	44.87	52.22
Solyc12g010490.1.1	Tomato	plastid	45.35	52.2
Zm00001d032144_P001	Maize	nucleus	48.69	50.37
OQU80549	Sorghum	nucleus	52.27	49.77
PGSC0003DMT400087745	Potato	nucleus	34.13	48.64
Os06t0145700-00	Rice	nucleus	35.56	46.27
Os05t0536250-00	Rice	nucleus	37.23	36.19
Os12t0126300-00	Rice	nucleus	37.47	35.2
Os07t0124700-01	Rice	nucleus	26.97	34.14
Os06t0657500-02	Rice	nucleus	31.03	27.72
Os03t0313100-01	Rice	extracellular, nucleus	28.16	27.38
Os04t0653600-01	Rice	nucleus	32.22	27.27
Os11t0295900-01	Rice	nucleus	31.03	23.26
Os02t0614300-01	Rice	mitochondrion, nucleus	17.18	22.43
Os04t0504500-01	Rice	nucleus	31.98	20.36
Os03t0232200-01	Rice	nucleus	31.03	20.25
Os01t0899800-01	Rice	nucleus	32.46	19.57
Os03t0770700-01	Rice	plastid	7.16	8.85

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	EntrezGene:4345697	EMBL:AK106769	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:BAF23831.1	ProteinID:BAT05642.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EMBL:HQ858820	InterPro:IPR001471	InterPro:IPR036955
EnsemblPlantsGene:Os08g0442400	EnsemblPlants:Os08t0442400-01	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF20	UniProt:Q0J5D4	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0000DD9540	RefSeq:XP_015651011.1
SEG:seg	:	:	:	:	:

Description

APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 109Similar to BABY BOOM. (Os08t0442400-01)

Coordinates

chr8:+:21564093..21568488

Molecular Weight (calculated)

45604.2 Da

IEP (calculated)

5.328

GRAVY (calculated)

-0.664

Length

419 amino acids

Sequence
(BLAST)

001: MAKRRSNGET AAASSDDSSS GVCGGGGGGE VEPRRRQKRP RRSAPRDCPS QRSSAFRGVT RHRWTGRFEA HLWDKNTWNE SQSKKGRQVY LGAYDGEEAA
101: ARAYDLAALK YWGHDTVLNF PLSTYDEELK EMEGQSREEY IGSLRRKSSG FSRGVSKYRG VARHHHNGKW EARIGRVFGN KYLYLGTYAT QEEAAVAYDI
201: AAIEHRGLNA VTNFDINLYI RWYHGSCRSS SAAAATTIED DDFAEAIAAA LQGVDEQPSS SPATTRQLQT ADDDDDDLVA QLPPQLRPLA RAASTSPIGL
301: LLRSPKFKEI IEQAAAAAAS SSGSSSSSST DSPSSSSSSS LSPSPLPSPP PQQQPTVPKD DQYNVDMSSV AAARCSFPDD VQTYFGLDDD GFGYPEVDTF
401: LFGDLGAYAA PMFQFELDV

Best Arabidopsis Sequence Match ( AT1G79700.2 )
(BLAST)

001: MAKVSGRSKK TIVDDEISDK TASASESASI ALTSKRKRKS PPRNAPLQRS SPYRGVTRHR WTGRYEAHLW DKNSWNDTQT KKGRQVYLGA YDEEEAAARA
101: YDLAALKYWG RDTLLNFPLP SYDEDVKEME GQSKEEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE AAIAYDIAAI
201: EYRGLNAVTN FDVSRYLNPN AAADKADSDS KPIRSPSREP ESSDDNKSPK SEEVIEPSTS PEVIPTRRSF PDDIQTYFGC QDSGKLATEE DVIFDCFNSY
301: INPGFYNEFD YGP

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A8MQS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.