Factsheet for Solyc05g054820.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g115070.1.1
Solyc03g121060.2.1
Solyc04g077210.2.1
Solyc06g050350.2.1
Solyc06g074190.2.1
Solyc11g068720.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55150.1	Solyc03g121060.2.1	AT1G51950.1	21798944
AT3G55150.1	Solyc06g050350.2.1	AT3G56270.1	21798944
AT3G55150.1	Solyc04g077210.2.1	AT4G08150.1	21798944
AT3G55150.1	Solyc06g074190.2.1	AT5G22310.1	21798944
AT3G55150.1	Solyc11g068720.1.1	AT5G22310.1	21798944
AT3G55150.1	Solyc03g115070.1.1	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060448	Potato	plastid	88.22	87.81
VIT_00s0317g00140.t01	Wine grape	plastid	50.39	52.25
CDY07003	Canola	cytosol, golgi, mitochondrion, plastid	29.15	47.47
Bra017078.1-P	Field mustard	cytosol	40.47	46.94
CDX76117	Canola	plastid	45.43	46.29
CDX73400	Canola	plastid	44.81	46.09
Bra014771.1-P	Field mustard	plastid	45.12	46.04
CDX93267	Canola	plastid	42.79	46.0
CDX74849	Canola	plastid	44.81	45.95
AT2G39380.1	Thale cress	plastid	45.12	45.68
CDY02916	Canola	plastid	44.81	45.66
Bra005044.1-P	Field mustard	cytosol, nucleus, plastid	40.47	45.47
Bra007146.1-P	Field mustard	plastid	44.34	45.47
CDY40204	Canola	plastid	43.88	45.35
CDY64629	Canola	plastid	44.96	45.1
CDX74848	Canola	plastid	42.48	44.92
CDY64627	Canola	plastid	44.96	44.89
AT3G55150.1	Thale cress	plastid	44.19	44.81
CDY44645	Canola	plastid	44.65	44.72
Bra005045.1-P	Field mustard	plastid	44.81	44.6
Solyc09g005840.1.1	Tomato	plastid	43.1	43.71
Solyc06g005280.1.1	Tomato	plastid	40.0	43.14
CDX74850	Canola	plastid	44.96	43.03
Solyc09g005830.1.1	Tomato	plastid	42.17	42.63
Bra005046.1-P	Field mustard	plastid	44.19	42.41
Solyc11g073010.1.1	Tomato	plastid	41.55	42.27
Solyc06g075610.1.1	Tomato	plastid	39.84	41.25
CDY44646	Canola	cytosol	43.41	40.11
GSMUA_AchrUn_...	Banana	cytosol	34.73	39.16
GSMUA_Achr10P...	Banana	cytosol	26.82	38.36
GSMUA_Achr10P...	Banana	mitochondrion	35.81	37.56
GSMUA_Achr7P15340_001	Banana	mitochondrion	34.57	36.56
GSMUA_Achr6P34400_001	Banana	mitochondrion	33.64	35.93
Solyc06g062990.1.1	Tomato	cytosol	24.65	26.68
Solyc03g122240.2.1	Tomato	nucleus	24.03	26.45
Solyc04g009740.2.1	Tomato	nucleus	26.51	26.27
Solyc11g006620.1.1	Tomato	cytosol	25.74	25.23
Solyc08g066070.1.1	Tomato	cytosol	24.19	24.72
Solyc10g081940.1.1	Tomato	cytosol	24.34	24.53
Solyc03g111320.1.1	Tomato	cytosol	25.27	24.51
Solyc02g088800.1.1	Tomato	nucleus	24.65	24.13
Solyc01g009880.2.1	Tomato	nucleus	24.81	24.1
Solyc05g024340.1.1	Tomato	cytosol	22.02	23.99
Solyc02g094370.1.1	Tomato	cytosol	23.57	21.29
Solyc03g115070.1.1	Tomato	cytosol	20.78	21.1

Protein Annotations

EnsemblPlants:Solyc05g054820.1.1	EnsemblPlantsGene:Solyc05g054820.1	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0008150	GO:GO:0009987	InterPro:Cullin_repeat-like_dom_sf
InterPro:Exo70	PANTHER:PTHR12542	PANTHER:PTHR12542:SF26	PFAM:PF03081	SEG:seg	SUPFAM:SSF74788
UniParc:UPI0002766CC2	UniProt:K4C2F9	MapMan:22.6.3.1	:	:	:

Description

No Description!

Coordinates

chr5:+:64636925..64638862

Molecular Weight (calculated)

72906.2 Da

IEP (calculated)

7.358

GRAVY (calculated)

-0.216

Length

645 amino acids

Sequence
(BLAST)

001: MAILDMSKRE PSSPSTPQRA KKSLFSFAKT TSSLSSFSSH IPPHEPSLTF SRSIMEEHID NASTIIKKWD HKESSHEKFT SLFQEDRKEA KAYIQCVKDL
101: KKAMHFFVTQ HSTCNKLVLA QNLMQKAMKR LENEFYQILS TKKQHLDPES ISKSSRSSHT SRSTSVDSEE STDLGNGSST IQQNGAGSNS EAEHISFLTM
201: CDLKMIADCM IGCGYAKECW KIYRIIRKSV VDEGLYRLGI ESRSSAYVNA MRPNDLEHQV KHWIDSTKMA VKTLFYGERL LCDHVFSNSK TINETCFSDV
301: AKEGGIVLLK LPEIVAKTKK SDEKIFVLID LHEAIAELLP QIESIFSFDS ISSVKLQAIS LLNKLKISVL NILSDFELSI QRNSSKTTVS GGGVHPLTIS
401: VSDYLASLAS YSGVLSDIIS ESTSTKFSET YFESQTSEIS SVSGKMAWIV LVLLCKLDSK AELYNDIALS YLFLANNIQF IIERVRGSNL SIILGEEWIL
501: NLERKVKLYT TKYENVAWNK VFMCLPQSLD PAISSDTIKE YFKRFNESFE ATYQRQKSWV VPDGTLRDEI KVSIARKLVP FYRDFYEYYM VVLSGEKDLE
601: VLVKFSPDNI GNCLSDLFHE NVRSRSLILS SSTSLPNSCV WQCIS

Best Arabidopsis Sequence Match ( AT2G39380.1 )
(BLAST)

001: MSKKPKSVHF STSSPKSFLS SFPSFTSLPA SPLNQTFSQS MMEETVEAAE SIIKKWDPNS PSYTKIISLF SHSRREAKEF IRCIRDLRRA MHFLISQHSK
101: SAKLVLAQHL MQIAMARLEK EFFQILSSNR DQLDPESVSG HSSISSNSEF EDVMQSSDDE EEDELKKAGE TITKVEKAAA LVMSDLKVIA ETMISCGYGK
201: ECIKSYKLIR KSIVDEGLHL LGIEKCKISR FNRMDWDVLE HMIKNWIKAA KIGVITLLRG EKLLCDHVFS ASSTIRESCF YEIVNEAGIN LFKFPELVAE
301: KKPSPERIFR LMDLYAAISD LRPDIELIFH FDSVAAVKTL VLSSLKKLKD SIYTSLMEFE STIQKDSSKA LTAGGGIHKL TRSTMSFISS LSEYSRVLSE
401: ILAEHPLKKN TRMLESYFTA PILEDEHNNH AVSVHLAWLI LIFLCKLDIK AESYKDVSLS YLFLVNNIQF VVDTVRSTHL RNLLGDDWLT KHEAKLRSYA
501: ANYEIAAWAN VYISLPEKTS SRLSPEEAKT HFKRFHAVFE EAYMKQSSCV ITDAKLRNEL KVSIAKKIVP EYREFYGKYL PTLSKERNIE MLVSFKPDNL
601: ENYLSDLFHG TPILSGSSSS SSSLSSSSCI SLGCVRN

Arabidopsis Description

ATEXO70H2Exocyst subunit exo70 family protein H2 [Source:UniProtKB/TrEMBL;Acc:O80625]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.