Factsheet for VIT_00s0317g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06360.t01
VIT_06s0080g00930.t01
VIT_09s0002g03410.t01
VIT_13s0067g02400.t01
VIT_16s0013g00240.t01
VIT_17s0000g07350.t01
VIT_18s0001g08380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55150.1	VIT_01s0011g06360.t01	AT1G14687.1	21798944
AT3G55150.1	VIT_09s0002g03410.t01	AT1G51950.1	21798944
AT3G55150.1	VIT_13s0067g02400.t01	AT3G56270.1	21798944
AT3G55150.1	VIT_18s0001g08380.t01	AT4G08150.1	21798944
AT3G55150.1	VIT_06s0080g00930.t01	AT5G22310.1	21798944
AT3G55150.1	VIT_16s0013g00240.t01	AT5G51110.1	21798944
AT3G55150.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04010.t01	Wine grape	plastid	59.81	60.39
VIT_08s0040g02730.t01	Wine grape	plastid	56.75	55.59
CDY40204	Canola	plastid	53.86	53.69
AT2G39380.1	Thale cress	plastid	54.82	53.53
CDX73400	Canola	plastid	53.86	53.43
Bra014771.1-P	Field mustard	plastid	54.02	53.16
Bra007146.1-P	Field mustard	plastid	53.7	53.1
CDX76117	Canola	plastid	54.02	53.08
CDY02916	Canola	plastid	53.86	52.92
CDY07003	Canola	cytosol, golgi, mitochondrion, plastid	33.44	52.53
AT3G55150.1	Thale cress	plastid	53.7	52.52
Bra005044.1-P	Field mustard	cytosol, nucleus, plastid	47.75	51.74
Bra017078.1-P	Field mustard	cytosol	45.98	51.44
CDX74849	Canola	plastid	51.93	51.35
PGSC0003DMT400060448	Potato	plastid	53.38	51.23
CDY64629	Canola	plastid	52.41	50.7
Solyc05g054820.1.1	Tomato	plastid	52.25	50.39
Bra005045.1-P	Field mustard	plastid	52.25	50.15
CDY64627	Canola	plastid	51.77	49.85
CDY44645	Canola	plastid	51.61	49.84
CDX74848	Canola	plastid	48.23	49.18
CDX93267	Canola	plastid	47.27	49.0
CDX74850	Canola	plastid	52.25	48.22
Bra005046.1-P	Field mustard	plastid	51.61	47.77
GSMUA_AchrUn_...	Banana	cytosol	43.57	47.38
GSMUA_Achr10P...	Banana	mitochondrion	43.89	44.39
CDY44646	Canola	cytosol	49.52	44.13
GSMUA_Achr10P...	Banana	cytosol	31.99	44.12
GSMUA_Achr7P15340_001	Banana	mitochondrion	42.77	43.61
GSMUA_Achr6P34400_001	Banana	mitochondrion	39.23	40.4
VIT_09s0002g00910.t01	Wine grape	cytosol	29.9	30.69
VIT_14s0068g00250.t01	Wine grape	cytosol	30.55	29.14
VIT_17s0000g01450.t01	Wine grape	cytosol	30.71	29.07
VIT_13s0073g00170.t01	Wine grape	cytosol	28.3	27.08
VIT_17s0000g07350.t01	Wine grape	cytosol	27.17	26.28
VIT_08s0007g02340.t01	Wine grape	cytosol	26.85	25.77
VIT_01s0146g00160.t01	Wine grape	nucleus	26.37	25.08
VIT_06s0004g07440.t01	Wine grape	cytosol	24.44	24.24

Protein Annotations

EntrezGene:100241639	wikigene:100241639	MapMan:22.6.3.1	ProteinID:CCB57377	ProteinID:CCB57377.1	InterPro:Cullin_repeat-like_dom_sf
InterPro:Exo70	UniProt:F6HRR9	EMBL:FN596030	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0008150	GO:GO:0009987
EntrezGene:LOC100241639	wikigene:LOC100241639	PFAM:PF03081	PANTHER:PTHR12542	PANTHER:PTHR12542:SF26	SUPFAM:SSF74788
UniParc:UPI0001984791	ArrayExpress:VIT_00s0317g00140	EnsemblPlantsGene:VIT_00s0317g00140	EnsemblPlants:VIT_00s0317g00140.t01	RefSeq:XP_002276070	RefSeq:XP_002276070.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:23062496..23064497

Molecular Weight (calculated)

69830.2 Da

IEP (calculated)

6.746

GRAVY (calculated)

-0.234

Length

622 amino acids

Sequence
(BLAST)

001: MATLFISSSK ASSASSFSVH QTISLPRHTA FSEYMMEESV DHAHAIITKW DTKSPTSLFH ENRKEGREFL KCVKDLRTAM HFFLSQKSAS GKLVLAQQLM
101: QIAMKRLEKE FYQILSANRD RLDPDSVRSC VSGRSSNSDD DQYQCDVGSD EEINVAGESI SEVERVSALA MYDLKAIADC MIGCGYGKEC VKIYKIIRKS
201: IVDEGLYRIG IERNSSSQIS KMNFEALQHK IKHWLSAVRI AVKTLFNGER VLCDHVFSAS DSIRESSFAE ITREGAINLF KFPELVARTK RSSPHKIFCF
301: LDLYEAISDL LPEIELIFSF ESTSAVRLQV SSSLQKLSEA VRATLSEFES VVQKDSSKTL VTGGGIHPLT ESAMNYISSL ANYSGVLSEI LADWPLPVQS
401: PFPESYFDSP KSIDNPPSAM AMRLAWLILV LLCRLDCKAE LYKDIGLSYL FLANNLHFVL EKVRTSNLRY LLGEEWISKH EKKVKQYSAS YEVMGWTKVF
501: SSLPENNSQA PMSPEDVKEC FGRFNLAFEE AYRKQTSWVV QDGKLRDDIK VSIAKKLVPA YGEFYEKYLG MLDGERNLEV LVRFSPDDLG NYLSDLLHGT
601: AISGSSSSSS SSSSSQKSGR AR

Best Arabidopsis Sequence Match ( AT2G39380.1 )
(BLAST)

001: MSKKPKSVHF STSSPKSFLS SFPSFTSLPA SPLNQTFSQS MMEETVEAAE SIIKKWDPNS PSYTKIISLF SHSRREAKEF IRCIRDLRRA MHFLISQHSK
101: SAKLVLAQHL MQIAMARLEK EFFQILSSNR DQLDPESVSG HSSISSNSEF EDVMQSSDDE EEDELKKAGE TITKVEKAAA LVMSDLKVIA ETMISCGYGK
201: ECIKSYKLIR KSIVDEGLHL LGIEKCKISR FNRMDWDVLE HMIKNWIKAA KIGVITLLRG EKLLCDHVFS ASSTIRESCF YEIVNEAGIN LFKFPELVAE
301: KKPSPERIFR LMDLYAAISD LRPDIELIFH FDSVAAVKTL VLSSLKKLKD SIYTSLMEFE STIQKDSSKA LTAGGGIHKL TRSTMSFISS LSEYSRVLSE
401: ILAEHPLKKN TRMLESYFTA PILEDEHNNH AVSVHLAWLI LIFLCKLDIK AESYKDVSLS YLFLVNNIQF VVDTVRSTHL RNLLGDDWLT KHEAKLRSYA
501: ANYEIAAWAN VYISLPEKTS SRLSPEEAKT HFKRFHAVFE EAYMKQSSCV ITDAKLRNEL KVSIAKKIVP EYREFYGKYL PTLSKERNIE MLVSFKPDNL
601: ENYLSDLFHG TPILSGSSSS SSSLSSSSCI SLGCVRN

Arabidopsis Description

ATEXO70H2Exocyst subunit exo70 family protein H2 [Source:UniProtKB/TrEMBL;Acc:O80625]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.