Factsheet for VIT_01s0146g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97230	Canola	cytosol	21.1	73.02
CDX69666	Canola	cytosol	20.95	72.49
PGSC0003DMT400013431	Potato	nucleus	56.42	55.57
Solyc01g009880.2.1	Tomato	nucleus	56.27	55.42
PGSC0003DMT400006075	Potato	cytosol	50.15	55.41
Solyc05g024340.1.1	Tomato	cytosol	49.39	54.56
Os12t0165600-01	Rice	cytosol, plasma membrane	40.52	54.19
Bra006183.1-P	Field mustard	nucleus	51.38	53.59
CDX78509	Canola	nucleus	51.38	53.59
CDY69943	Canola	cytosol	50.76	52.95
Bra008852.1-P	Field mustard	nucleus	50.0	50.93
AT5G13150.1	Thale cress	nucleus	50.61	50.69
GSMUA_Achr6P07200_001	Banana	nucleus	50.46	49.92
KRH36360	Soybean	cytosol	44.8	48.43
GSMUA_Achr6P25750_001	Banana	endoplasmic reticulum	49.24	45.93
TraesCS5B01G122500.1	Wheat	plastid	46.33	45.77
EES08037	Sorghum	cytosol, plastid	46.48	44.25
Zm00001d053192_P001	Maize	cytosol, plastid	46.18	44.22
Zm00001d004846_P001	Maize	cytosol, plastid	46.18	44.15
Zm00001d023513_P001	Maize	plastid	46.02	44.07
Zm00001d041908_P001	Maize	plastid	45.41	43.87
Os11t0167600-00	Rice	plasma membrane	46.18	43.64
EES16704	Sorghum	plastid	46.48	43.55
KRG93132	Soybean	cytosol	30.43	42.34
TraesCS4B01G112100.1	Wheat	cytosol	45.87	42.25
TraesCS4D01G109600.1	Wheat	cytosol	45.72	42.11
TraesCS4A01G208500.1	Wheat	cytosol	45.57	42.09
HORVU4Hr1G020050.1	Barley	cytosol, plastid	45.57	42.09
TraesCS5D01G130800.1	Wheat	plastid	46.02	41.81
GSMUA_Achr6P18090_001	Banana	nucleus	29.05	41.21
TraesCS5A01G122400.1	Wheat	mitochondrion	46.18	40.87
HORVU5Hr1G039240.1	Barley	plastid	38.07	34.2
VIT_09s0002g00910.t01	Wine grape	cytosol	31.35	33.83
VIT_17s0000g01450.t01	Wine grape	cytosol	33.79	33.64
VIT_06s0004g07440.t01	Wine grape	cytosol	30.73	32.06
VIT_17s0000g07350.t01	Wine grape	cytosol	29.66	30.17
VIT_13s0073g00170.t01	Wine grape	cytosol	28.59	28.77
VIT_06s0004g04010.t01	Wine grape	plastid	26.91	28.57
VIT_14s0068g00250.t01	Wine grape	cytosol	28.44	28.53
VIT_08s0007g02340.t01	Wine grape	cytosol	27.22	27.47
VIT_00s0317g00140.t01	Wine grape	plastid	25.08	26.37
VIT_08s0040g02730.t01	Wine grape	plastid	24.46	25.2
GSMUA_Achr10P...	Banana	cytosol	29.2	24.55

Protein Annotations

Gene3D:1.20.1280.170	EntrezGene:100259218	wikigene:100259218	MapMan:22.6.3.1	ProteinID:CCB60849	ProteinID:CCB60849.1
InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70	UniProt:F6I1N2	EMBL:FN596513	GO:GO:0000003	GO:GO:0000145
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006810
GO:GO:0006887	GO:GO:0008150	GO:GO:0009653	GO:GO:0009856	GO:GO:0009987	GO:GO:0016043
GO:GO:0016049	GO:GO:0030154	GO:GO:0040007	GO:GO:0080092	GO:GO:0090406	EntrezGene:LOC100259218
wikigene:LOC100259218	PFAM:PF03081	PANTHER:PTHR12542	PANTHER:PTHR12542:SF15	SUPFAM:SSF74788	UniParc:UPI0001982A57
ArrayExpress:VIT_01s0146g00160	EnsemblPlantsGene:VIT_01s0146g00160	EnsemblPlants:VIT_01s0146g00160.t01	RefSeq:XP_002264953	RefSeq:XP_002264953.1	:

Description

No Description!

Coordinates

chr1:-:21941247..21943211

Molecular Weight (calculated)

74055.9 Da

IEP (calculated)

5.019

GRAVY (calculated)

-0.575

Length

654 amino acids

Sequence
(BLAST)

001: MEKPPPEKSG SFSGHNVESH PPESEAEGEL EDRENAKESS SISDSALPQV SQDIDGFLSH LSLHDDKSNP PDVPDSVEVF CKLVEAMIGN YDSGDSSARF
101: GQVPEEDTAF VESVGRISKL MNALRGFPVE SPAAAMYGRS GSVLQRAMSF LEDELRTLLE DSRSHISDSK SLKTKHPSFN SKEDHDRCPL PESESTGDDE
201: YPAYPPEVVA SMKKIAMAMI SAGYETECCQ VFSILRRNAF KEAINKLGFD SISIDDVQKM HWETLEGEIA KWIKVVKHCS LILFPGERRF AESVFEDYPE
301: IFSSQFSNLA RATVIHFLNF AEAVAMTKRS AEKLFKFLDM YESLRDLVPA ISSPTSDDNG HELKSETMTA GSRLGEAAVS IFCDLENSIK SDVSKTPVPS
401: GAVHPLTRYT MNYLKYACEY KDTLEEVFQQ HQKIERTDEA GSDVDERSSQ NNSRLPVKQT PFATQLIAVM DLLDSNLDTK SKLYKDMSLR YIFLMNNGRY
501: ILQKIKGSSE IHEVMGDTWC RRRSSDLRQY HKNYQRETWS KVLQCLRDEG LQVNGKVNKP VLKERFKTFN TLFDEIHKTQ STWVVSDEQL QSELRVSISA
601: VMIPAYRSFL ARFSQYLDSG RQTEKYVKYQ PDDIETSIDE LFDGNPTSMT RKRT

Best Arabidopsis Sequence Match ( AT5G13150.1 )
(BLAST)

001: MEKSGNHHHA NESSENHDHK SEDHENKQHS DELHSSTPES QSESSEHSLV EVMEAVVDFI QTLSSEKDPL GEISPAVESF PEAVDSLVSK MESSGLGRDE
101: TEDSVFIDAV NRISKSVMRL RELKLDSTPV SSWLNRASSV QHRAVSLLDE EFRHLLDRSR EEEKKNNNNN NHHDGSNSDH NNSSTNDSDR CVLQDHEEAE
201: EESFHDFSPE SISTLKKIAG AMISAGYEAE CCMSYEMSRR HAFKEELTEV GFEGINVEDV QRIGWESLEG EIASWISIVR RCSTVLFPGE LSLCNAVFPD
301: QDHSSVRKRL FTGLVSAVTI RFLDFSGAVV LTKRSSEKLF KFLDMYETLR DLIPAVEQSD SDLIQEIKLA QTRLGEAAVT IFGELEKSIK SDNGRTPVPS
401: GAVHPLTRYT MNYLKYACEY KETLDQVFQH YEANQTDNKP EPETKPRQQQ REDDEEYKVS AFARQMIRVM ELLDANLEIK SRLYRDPSLR FIFLMNNGRY
501: ILQKIKGSIE IRDLMGQSWT RKRSTELRQY HKSYQRETWG KVLQCMNQEG LQVNGKVSKP VLKERFKIFN AMFDEIHKTQ STWIVSDEQM QSELRVSISS
601: LVIPAYRSFF GRYKQHLDSG KQTDKYVKYQ PEDIESFIDD LFDGNPTSMA RKR

Arabidopsis Description

ATEXO70C1Exocyst subunit exo70 family protein C1 [Source:UniProtKB/TrEMBL;Acc:Q9FY95]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.