Factsheet for VIT_06s0080g00930.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0179g00350.t01
VIT_01s0150g00170.t01
VIT_03s0088g01000.t01
VIT_04s0044g00870.t01
VIT_05s0020g04480.t01
VIT_06s0080g00930.t01
VIT_08s0007g02790.t01
VIT_12s0028g01810.t01
VIT_14s0219g00290.t01
VIT_17s0000g07350.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22310.1	VIT_01s0150g00170.t01	AT1G01630.1	21798944
AT5G22310.1	VIT_12s0028g01810.t01	AT1G06390.1	21798944
AT5G22310.1	VIT_14s0219g00290.t01	AT3G01690.1	21798944
AT5G22310.1	VIT_08s0007g02790.t01	AT3G11590.1	21798944
AT5G22310.1	VIT_04s0044g00870.t01	AT3G18710.1	21798944
AT5G22310.1	VIT_00s0179g00350.t01	AT3G22960.1	21798944
AT5G22310.1	VIT_05s0020g04480.t01	AT3G22960.1	21798944
AT5G22310.1	VIT_03s0088g01000.t01	AT4G33690.1	21798944
AT5G22310.1	VIT_06s0080g00930.t01	AT5G22310.1	21798944
AT5G22310.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g02790.t01	Wine grape	plastid	58.9	58.36
Solyc11g068720.1.1	Tomato	nucleus	52.45	53.94
PGSC0003DMT400067737	Potato	nucleus	47.24	53.94
KRH25284	Soybean	plastid	50.92	50.38
KRH30384	Soybean	plastid	50.61	49.85
Solyc06g074190.2.1	Tomato	nucleus	39.42	47.42
PGSC0003DMT400015076	Potato	nucleus	40.64	46.57
Bra006620.1-P	Field mustard	nucleus	27.45	39.69
AT5G22310.1	Thale cress	nucleus	28.99	39.29
CDX88802	Canola	nucleus	27.61	38.46
CDX92367	Canola	mitochondrion, plastid	28.07	38.12
CDX70996	Canola	nucleus	27.76	38.11
CDY67997	Canola	mitochondrion, plastid	27.45	38.0
GSMUA_Achr6P16290_001	Banana	nucleus	35.89	37.93
Bra002404.1-P	Field mustard	nucleus	27.91	37.6
GSMUA_Achr6P08260_001	Banana	nucleus	28.99	32.98
TraesCS2B01G299400.1	Wheat	nucleus, plastid	27.3	31.96
Os02t0506100-00	Rice	plastid	21.32	31.88
HORVU2Hr1G069400.8	Barley	nucleus	24.85	31.83
Os04t0382800-00	Rice	nucleus	27.76	31.7
TraesCS2D01G281000.1	Wheat	nucleus, plastid	26.99	31.1
EES11990	Sorghum	nucleus	26.99	30.99
TraesCS2A01G282200.1	Wheat	nucleus	26.84	30.92
TraesCS7D01G134000.1	Wheat	nucleus	27.45	30.92
TraesCS7B01G035800.1	Wheat	nucleus	27.15	30.62
Zm00001d003996_P001	Maize	nucleus	26.53	30.4
TraesCS7A01G134600.1	Wheat	nucleus	26.99	30.4
Zm00001d025208_P002	Maize	nucleus	26.99	30.03
Zm00001d000402_P001	Maize	mitochondrion	23.62	28.1
KXG30263	Sorghum	mitochondrion	25.77	27.01
VIT_15s0046g01530.t01	Wine grape	mitochondrion	27.15	26.86
VIT_02s0025g00840.t01	Wine grape	nucleus	25.0	23.94
VIT_19s0090g00370.t01	Wine grape	plastid	25.15	22.87
VIT_10s0116g01830.t01	Wine grape	nucleus	24.85	21.98

Protein Annotations

ArrayExpress:VIT_06s0080g00930	EMBL:FN595757	EnsemblPlants:VIT_06s0080g00930.t01	EnsemblPlantsGene:VIT_06s0080g00930	EntrezGene:100255248	EntrezGene:LOC100255248
ncoils:Coil	PANTHER:PTHR31071	PANTHER:PTHR31071:SF7	ProteinID:CCB51631	ProteinID:CCB51631.1	RefSeq:XP_002272987
RefSeq:XP_002272987.2	RefSeq:XP_010651863.1	SEG:seg	unigene:Vvi.17651	UniParc:UPI0001985AF7	UniProt:F6HHD5
wikigene:100255248	wikigene:LOC100255248	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6:+:21016367..21019069

Molecular Weight (calculated)

73595.5 Da

IEP (calculated)

9.111

GRAVY (calculated)

-0.937

Length

652 amino acids

Sequence
(BLAST)

001: MLRQQHMEGR VGGRCKIRKR GCSSSSSSSL AHKYRFKRAI LVGKRGGSST PVPTWKVNSR SPSSALKAAE SAAKGKEASV SARKLAATLW EINDVKEMRN
101: QKESRSKERV ARSAQLLPPH LLDPSHSPFS ERMDRSRGGS HRRRRSAVSQ KLQTTECNLG GLDSLSTASF MEDPMQTETQ SRGRTHSGCI VGVKTRLKDV
201: SNGLATSKEL LKVLNRIWGL EEKNSSSIPV VSALRLELDR ARTQVDQLIR EQRSNRDEIN YLMKHFAEEK AAWKSKERAR IREAIASIAG ELDVEKKLRR
301: QTERLNKKLG EELGHIKASL SKALKELKSE KRAREILEQM CDELAQGIGE DRAEVEELKR ESAKVREEVE KEREMLQLAD VLREERVQMK LSEAKYQFEE
401: KNAAVDKLRH ELEAYLRSKS GNDKNNGSPN PNGSEELEDY LRKALMDLCQ DREKEEDDGE VENAEECEAD DSAESDLHSI ELNMDNSSKS YMWSYACGTE
501: AQDDSNRVSV DREIRGRKPT SGKIQWGNIS LERVTSNGME WDFDNISQEN SYAFDKGRTP EHDSEARRKD YEDEIKRYKS VKGLRDHILS GSKVSSIQGF
601: ASPTRKWEQA SPLQDCSSVV LESLAVVQGS GSRVVRVAGT RGERQALAHS KQ

Best Arabidopsis Sequence Match ( AT3G11590.1 )
(BLAST)

001: MPRQNQSVEN LLLLGKIRKR GCSSPTSSTS SILREGYRFK RAIVVGKRGG STTPVPTWRL MGRSPSPRAS GALHAAASPS SHCGSKTGKV SAPAPVSARK
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW

Arabidopsis Description

At3g11590/F24K9_26 [Source:UniProtKB/TrEMBL;Acc:Q9CAW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.