Factsheet for VIT_10s0116g01830.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0090g00370.t01	Wine grape	plastid	54.14	55.65
GSMUA_Achr6P00380_001	Banana	nucleus	30.66	52.8
GSMUA_Achr7P00230_001	Banana	nucleus	35.01	52.33
KRH20862	Soybean	cytosol	18.59	50.93
GSMUA_Achr8P01540_001	Banana	nucleus	32.7	47.63
GSMUA_Achr6P19720_001	Banana	nucleus	43.01	45.22
GSMUA_Achr10P...	Banana	nucleus, plastid	43.01	44.96
GSMUA_Achr2P03040_001	Banana	nucleus	27.41	44.1
GSMUA_Achr9P30230_001	Banana	nucleus, plastid	42.2	43.62
PGSC0003DMT400042430	Potato	nucleus	36.5	42.83
TraesCS1B01G329400.1	Wheat	plastid	37.99	42.62
TraesCS1D01G317000.1	Wheat	nucleus, plastid	37.58	42.16
TraesCS1A01G317000.1	Wheat	plastid	37.45	41.75
Solyc02g080520.2.1	Tomato	nucleus	35.69	41.55
HORVU1Hr1G066770.1	Barley	mitochondrion, plasma membrane	37.99	41.48
EES12886	Sorghum	plastid	38.81	41.33
Zm00001d026344_P001	Maize	plastid	38.4	41.19
Os04t0625000-01	Rice	nucleus	38.4	40.66
Zm00001d002252_P001	Maize	plastid	37.72	40.52
Zm00001d038595_P001	Maize	nucleus, plastid	36.91	40.36
EES19759	Sorghum	plastid	36.5	40.27
KRH11424	Soybean	nucleus, plastid	21.03	40.26
TraesCS2A01G469100.1	Wheat	plastid	37.72	40.12
KRH02074	Soybean	plastid	22.93	39.86
TraesCS2B01G492000.1	Wheat	plastid	37.04	39.85
TraesCS2D01G469200.1	Wheat	plastid	37.18	39.65
Zm00001d012593_P001	Maize	plastid	32.16	39.57
EES01592	Sorghum	plastid	35.96	39.2
KRH51081	Soybean	plastid	23.74	39.15
Os08t0190700-00	Rice	nucleus	31.34	38.95
Zm00001d043218_P001	Maize	plastid	35.41	38.78
OQU80028	Sorghum	plastid	34.6	38.64
Zm00001d000005_P002	Maize	plastid	33.65	35.99
TraesCS7D01G288600.1	Wheat	plastid	30.66	35.15
TraesCS7A01G295000.1	Wheat	plastid	29.85	35.03
TraesCS7B01G197400.1	Wheat	plastid	30.26	34.63
KRH11499	Soybean	plastid	30.8	33.78
KRH36516	Soybean	plastid	26.46	33.39
HORVU7Hr1G065950.7	Barley	vacuole	29.72	33.28
GSMUA_Achr4P23750_001	Banana	cytosol	17.91	32.35
VIT_06s0080g00930.t01	Wine grape	plastid	21.98	24.85
VIT_08s0007g02790.t01	Wine grape	plastid	21.57	24.16
VIT_15s0046g01530.t01	Wine grape	mitochondrion	19.27	21.55
VIT_02s0025g00840.t01	Wine grape	nucleus	18.72	20.26

Protein Annotations

ArrayExpress:VIT_10s0116g01830	EMBL:FN595248	EnsemblPlants:VIT_10s0116g01830.t01	EnsemblPlantsGene:VIT_10s0116g01830	EntrezGene:100245273	EntrezGene:LOC100245273
ncoils:Coil	PANTHER:PTHR31071	PANTHER:PTHR31071:SF14	ProteinID:CCB48222	ProteinID:CCB48222.1	RefSeq:XP_002268763
RefSeq:XP_002268763.2	SEG:seg	UniParc:UPI0002109016	UniProt:F6H7N0	wikigene:100245273	wikigene:LOC100245273
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:1098474..1102380

Molecular Weight (calculated)

82032.4 Da

IEP (calculated)

8.981

GRAVY (calculated)

-0.850

Length

737 amino acids

Sequence
(BLAST)

001: MEKSKAYKAS PPPEDRGCNG DQSKPYRMKI QGGAHSPARF PPNGPTSSSG LNLNVTADAR LRRRKTRRPG SAGAGFRLRR SGTPEGRGSV LTTPLLRWKF
101: DDDEFGVGAG GESVAGRRGV RRVRSGGEVD VSARRLAAGL WHLSLAAESS GGGGGGRGGG KGGDLQCASY DRLGLESGRI TKPYHQHGPD IKDLLQSPPS
201: LSGPKNGILS KVDSSLPLSK SALERATKWD SGYSRSSDEF GHFYSQMKLH EDGQLSTVSV VSTLQAELLQ ARTRIHELEA ERHSFKKKLE HFLKKVNEDR
301: TSWQSREQQK IRGIIDDLKD KLNIERKNRQ RMEILNSKLV NELADAKLSM KEFMQEYEKE RKGRELMEEV CNELAKEIGE DKAEVESFKR EYVKIREEVE
401: EERKMLQMAE VWREERVQMK LVDAKLTLEN KYCQMNKLVA DLETFLSSRS ATLDVMELRH AELIRQAVNS VKIQDIKEFS YAPPKTDDIF SIFEELKNGE
501: ANGREIEPCT NYNPPTHASK IQNGNPEVNR FSKSPLQKCP NGFVDHNRCL EEDASGWETV SRVEDQGSIY SLEGSDYSVN RFSQGRNASR SGIEWDENAG
601: QDSPHTATSE VCSVSAKQSK QTKQNASSVS KLWRSCSSNG EIYKIISDEG NARLSNGTIT SVGTMSPSRG LGEGGLSHQD LVDQWSSPET GNPHVTRGVK
701: GCTEHPQGTQ SSLKAKLLEA RMESQKIQLR QVLKQRS

Best Arabidopsis Sequence Match ( AT1G50660.1 )
(BLAST)

001: MKVTGKPYST ATLPAFESDK NLFSHGPDLR AIQRATTVTK RRARNPSLTR QRRSGPSGGR RSRPETPLLK WKVEDRNKER SGVVEDDDYE DDNHQVARSE
101: TTRRKDRRKI ARPVSVRKLA AGLWRLQVPD ASSSGGERKG KEGLGFQGNG GYMGVPYLYH HSDKPSGGQS NKIRQNPSTI ATTKNGFLCK LEPSMPFPHS
201: AMEGATKWDP VCLDTMEEVH QIYSNMKRID QQVNAVSLVS SLEAELEEAH ARIEDLESEK RSHKKKLEQF LRKVSEERAA WRSREHEKVR AIIDDMKTDM
301: NREKKTRQRL EIVNHKLVNE LADSKLAVKR YMQDYEKERK ARELIEEVCD ELAKEIGEDK AEIEALKRES MSLREEVDDE RRMLQMAEVW REERVQMKLI
401: DAKVALEERY SQMNKLVGDL ESFLRSRDIV TDVKEVREAE LLRETAASVN IQEIKEFTYV PANPDDIYAV FEEMNLGEAH DREMEKSVAY SPISHDSKVH
501: TVSLDANMMN KKGRHSDAYT HQNGDIEEDD SGWETVSHLE EQGSSYSPDG SIPSVNNKNH NHRHSNASSG GTESLGKVWD DTMTPTTEIS EVCSIPRRSS
601: KKVSSIAKLW RSTGASNGDR DSNYKVISME GMNGGRVSNG RKSSAGMVSP DRVSSKGGFS PMMDLVGQWN SSPESANHPH VNRGGMKGCI EWPRGAQKSS
701: LKSKLIEARI ESQKVQLKHV LKQRI

Arabidopsis Description

Actin cytoskeleton-regulatory complex pan-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LPT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.