Factsheet for Os04t0625000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 4

Predictors

GFP

MS/MS

Papers

nucleus: 19321431
nucleus: 24133045

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

msms PMID: 19321431 doi

MK Choudhary, D Basu, A Datta, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12886	Sorghum	plastid	84.2	84.68
Zm00001d026344_P001	Maize	plastid	80.46	81.51
Zm00001d002252_P001	Maize	plastid	79.17	80.32
TraesCS2B01G492000.1	Wheat	plastid	78.88	80.15
TraesCS2D01G469200.1	Wheat	plastid	79.31	79.88
TraesCS2A01G469100.1	Wheat	plastid	79.02	79.37
Os08t0190700-00	Rice	nucleus	54.74	64.25
GSMUA_Achr6P00380_001	Banana	nucleus	29.74	48.36
GSMUA_Achr7P00230_001	Banana	nucleus	33.05	46.65
Solyc07g064580.2.1	Tomato	nucleus	43.25	44.73
PGSC0003DMT400057488	Potato	nucleus	43.25	43.5
GSMUA_Achr2P03040_001	Banana	nucleus	27.87	42.36
KRH14411	Soybean	nucleus	41.52	41.88
KRH46168	Soybean	nucleus	41.95	41.77
KRH73733	Soybean	nucleus	41.38	41.68
Bra018866.1-P	Field mustard	nucleus	40.23	41.6
VIT_19s0090g00370.t01	Wine grape	plastid	42.82	41.56
KRG98777	Soybean	nucleus	41.52	41.34
PGSC0003DMT400071667	Potato	nucleus	40.23	41.12
CDY22812	Canola	nucleus	38.94	41.06
CDY37111	Canola	nucleus	39.8	40.8
Solyc12g005010.1.1	Tomato	nucleus	39.08	40.54
CDY25414	Canola	mitochondrion	36.35	39.72
Bra035788.1-P	Field mustard	mitochondrion	36.35	39.72
CDY29821	Canola	mitochondrion	36.06	39.28
Os05t0498500-01	Rice	cytosol, nucleus	8.33	39.19
AT3G20350.1	Thale cress	plastid	37.64	38.93
AT1G50660.1	Thale cress	nucleus	40.52	38.9
VIT_10s0116g01830.t01	Wine grape	nucleus	40.66	38.4
KRH20862	Soybean	cytosol	14.22	36.8
Solyc02g080520.2.1	Tomato	nucleus	30.32	33.33
PGSC0003DMT400042430	Potato	nucleus	30.03	33.28
KRH11424	Soybean	nucleus, plastid	17.24	31.17
KRH51081	Soybean	plastid	19.54	30.43
KRH02074	Soybean	plastid	18.39	30.19
GSMUA_Achr4P23750_001	Banana	cytosol	17.24	29.41
Os07t0102200-01	Rice	mitochondrion, nucleus	22.41	29.05
KRH36516	Soybean	plastid	22.84	27.23
KRH11499	Soybean	plastid	25.57	26.49
Os02t0506100-00	Rice	plastid	13.07	20.87
Os04t0382800-00	Rice	nucleus	16.52	20.14
Os02t0260500-00	Rice	nucleus	12.5	17.5
Os06t0507900-01	Rice	cytosol, nucleus	5.17	10.94

Protein Annotations

EMBL:AK242742	EnsemblPlants:Os04t0625000-01	EnsemblPlantsGene:Os04g0625000	EntrezGene:107276041	ncoils:Coil	PANTHER:PTHR31071
PANTHER:PTHR31071:SF12	ProteinID:BAS91103.1	ProteinID:CAE03514.2	RefSeq:XP_015636978.1	SEG:seg	UniParc:UPI00001B1716
UniProt:Q7XPQ1	MapMan:35.1	:	:	:	:

Description

Conserved hypothetical protein. (Os04t0625000-01)

Coordinates

chr4:-:31769056..31773154

Molecular Weight (calculated)

77633.9 Da

IEP (calculated)

7.248

GRAVY (calculated)

-0.759

Length

696 amino acids

Sequence
(BLAST)

001: MSSKHRSAAA AAAPAAAPPS AVRTPRRLRR RPLKTASGSG GGGGGGGGRR SGPATPLLKW DVGNGAEKGG GGGEKAGGPS EKAAAARDVS VRRLAAGVWR
101: LRPPEAVAGG AAAGSGERRR VHVGLEHIPR HLQVQLIKQN NLVHHQTLKN EISSPISVLE RKSGELHKVP LHAATAVLPV TAMEKATKWE PESLEGMEAH
201: DAYLIASQLN LLNEQQDATY VANLQMELQQ ARDRVSELET ERRAAKKKLD HLFKKLAEEK AAWRSREHEK VRAILEDMKA DLDHEKKNRR RLEMINLKLV
301: NELKEAKMSA KQLLQEYDNE RKARELTEEV CNELAREVEE DKAEIEALKH DSLKLREEVD EERKMLQMAE VWREERVQMK LVDAKLTLDA KYTQLSKLQQ
401: DVEAFIAACS CARGDIMVVE EAENIIQAIK SVRAQDIEFR YEPPAQSEDI FSIFEELRPS EEPVIKEIEP CYKNNSAMCE SEIQEASPMT DIFLEKPTKV
501: YSSKSPQNES DTEDGSSWET ISHEDMQASS GSPDGSEPSV NKICDGSISW TSRNDFEYKE AEKLKDDSTD IYLTNMNQPK KKESALSKLW KSSRPKNNDV
601: CKKDAVETIN GRSSNVRLSV GTHSTIDSGI QEIGLSSPSI GQWSSPDSMS MQFNRGFKGC MEYPRTSQKH SLKSKLMEAR MESQKVQLRQ VLKQKI

Best Arabidopsis Sequence Match ( AT1G50660.1 )
(BLAST)

001: MKVTGKPYST ATLPAFESDK NLFSHGPDLR AIQRATTVTK RRARNPSLTR QRRSGPSGGR RSRPETPLLK WKVEDRNKER SGVVEDDDYE DDNHQVARSE
101: TTRRKDRRKI ARPVSVRKLA AGLWRLQVPD ASSSGGERKG KEGLGFQGNG GYMGVPYLYH HSDKPSGGQS NKIRQNPSTI ATTKNGFLCK LEPSMPFPHS
201: AMEGATKWDP VCLDTMEEVH QIYSNMKRID QQVNAVSLVS SLEAELEEAH ARIEDLESEK RSHKKKLEQF LRKVSEERAA WRSREHEKVR AIIDDMKTDM
301: NREKKTRQRL EIVNHKLVNE LADSKLAVKR YMQDYEKERK ARELIEEVCD ELAKEIGEDK AEIEALKRES MSLREEVDDE RRMLQMAEVW REERVQMKLI
401: DAKVALEERY SQMNKLVGDL ESFLRSRDIV TDVKEVREAE LLRETAASVN IQEIKEFTYV PANPDDIYAV FEEMNLGEAH DREMEKSVAY SPISHDSKVH
501: TVSLDANMMN KKGRHSDAYT HQNGDIEEDD SGWETVSHLE EQGSSYSPDG SIPSVNNKNH NHRHSNASSG GTESLGKVWD DTMTPTTEIS EVCSIPRRSS
601: KKVSSIAKLW RSTGASNGDR DSNYKVISME GMNGGRVSNG RKSSAGMVSP DRVSSKGGFS PMMDLVGQWN SSPESANHPH VNRGGMKGCI EWPRGAQKSS
701: LKSKLIEARI ESQKVQLKHV LKQRI

Arabidopsis Description

Actin cytoskeleton-regulatory complex pan-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LPT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.