Factsheet for PGSC0003DMT400071667

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g005010.1.1	Tomato	nucleus	92.95	94.34
PGSC0003DMT400057488	Potato	nucleus	66.96	65.9
Bra018866.1-P	Field mustard	nucleus	52.86	53.49
CDY22812	Canola	nucleus	51.54	53.18
CDY37111	Canola	nucleus	52.42	52.58
KRH73733	Soybean	nucleus	53.3	52.53
VIT_19s0090g00370.t01	Wine grape	plastid	54.48	51.74
KRG98777	Soybean	nucleus	52.86	51.5
KRH14411	Soybean	nucleus	51.84	51.16
KRH46168	Soybean	nucleus	51.98	50.64
AT1G50660.1	Thale cress	nucleus	53.16	49.93
GSMUA_Achr7P00230_001	Banana	nucleus	35.83	49.49
GSMUA_Achr6P00380_001	Banana	nucleus	29.37	46.73
AT3G20350.1	Thale cress	plastid	45.67	46.21
GSMUA_Achr8P01540_001	Banana	nucleus	34.07	45.85
CDY25414	Canola	mitochondrion	42.44	45.37
Bra035788.1-P	Field mustard	mitochondrion	42.44	45.37
CDY29821	Canola	mitochondrion	42.0	44.76
GSMUA_Achr6P19720_001	Banana	nucleus	45.96	44.65
GSMUA_Achr2P03040_001	Banana	nucleus	29.07	43.23
GSMUA_Achr10P...	Banana	nucleus, plastid	44.35	42.84
GSMUA_Achr9P30230_001	Banana	nucleus, plastid	43.17	41.23
TraesCS1B01G329400.1	Wheat	plastid	39.21	40.64
TraesCS1A01G317000.1	Wheat	plastid	39.35	40.54
TraesCS1D01G317000.1	Wheat	nucleus, plastid	38.91	40.33
Os04t0625000-01	Rice	nucleus	41.12	40.23
EES12886	Sorghum	plastid	40.23	39.6
Zm00001d026344_P001	Maize	plastid	39.94	39.59
HORVU1Hr1G066770.1	Barley	mitochondrion, plasma membrane	39.21	39.56
Zm00001d002252_P001	Maize	plastid	39.79	39.5
Zm00001d012593_P001	Maize	plastid	33.77	38.4
TraesCS2B01G492000.1	Wheat	plastid	38.62	38.39
TraesCS2A01G469100.1	Wheat	plastid	38.91	38.24
TraesCS2D01G469200.1	Wheat	plastid	38.62	38.06
Os08t0190700-00	Rice	nucleus	32.89	37.77
EES19759	Sorghum	plastid	36.86	37.57
Zm00001d043218_P001	Maize	plastid	36.71	37.15
OQU80028	Sorghum	plastid	35.68	36.82
Zm00001d038595_P001	Maize	nucleus, plastid	36.42	36.8
EES01592	Sorghum	plastid	36.27	36.54
PGSC0003DMT400042430	Potato	nucleus	31.86	34.55
Zm00001d000005_P002	Maize	plastid	34.95	34.54
TraesCS7A01G295000.1	Wheat	plastid	30.54	33.12
TraesCS7D01G288600.1	Wheat	plastid	30.98	32.81
TraesCS7B01G197400.1	Wheat	plastid	30.69	32.45
GSMUA_Achr4P23750_001	Banana	cytosol	19.38	32.35
HORVU7Hr1G065950.7	Barley	vacuole	30.54	31.61
PGSC0003DMT400015076	Potato	nucleus	19.82	23.73
PGSC0003DMT400072353	Potato	plastid	21.88	22.75
PGSC0003DMT400067737	Potato	nucleus	18.8	22.42
PGSC0003DMT400000259	Potato	nucleus	19.09	19.91
PGSC0003DMT400032084	Potato	nucleus	16.45	16.52

Protein Annotations

EnsemblPlants:PGSC0003DMT400071667	EnsemblPlantsGene:PGSC0003DMG400027878	EntrezGene:102605289	ncoils:Coil	PANTHER:PTHR31071	PANTHER:PTHR31071:SF2
PGSC:PGSC0003DMG400027878	RefSeq:XP_006365958.1	SEG:seg	UniParc:UPI000296CB8B	UniProt:M1CP45	MapMan:35.1

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400027878]

Coordinates

chr12:+:9015432..9019255

Molecular Weight (calculated)

77128.9 Da

IEP (calculated)

8.461

GRAVY (calculated)

-0.867

Length

681 amino acids

Sequence
(BLAST)

001: MKITGDKAEL PAVTFPGLDL LQKPTNTRKP PRRKTNNFGA GVKLRRDIGG NTPKGRRSRP ETPLLRWKFN EDIHDNGSVK EETSTVEVDR KCSRNNGRTV
101: VSVRKLGAGL FRQQQLPEVK NGQKLGFQAG RVEMPFHFHH RSKVHDSLIN DPVQSPRSVF GPTNGLFHKL ETSLQFSHSA MEGATKWDPV GWTTAVETKK
201: IYGSQKLLDQ QVNTASMISS LEAELECAHA RAHQLETERH SSKKKLEQFL RKLSEEKAAW RSKEHEKIRA IMDDMKADFS RERKNRKRLE IVNSKLVNEL
301: ADAKLSAKRY LQNFEKERQA RGLIEEVCDE LAKELGEDKA EVEEMKRESL KFTEEVDEER KMLQMAEVWR EERVQMKLVD AKVMLEEKYS QMNKLIGELE
401: SFLNSRGMSF DVEEMKRAEQ LQQAASSCSI RDIRELTYEP PNQDDILSVF EDVHFVEPDE KDIQPCTFSP RSLSPDGVAY DFRRYSQAYV NQSANLEEEG
501: SEWETVTNVE EQGSNYSLEG SISSVNKNCR HSNVSRSRAD SEGIGDDVTS VSEISEVCSG PARQLTELSS ASKHWKSRPC NGDNFKIKSL EGTKGKLSNG
601: RLSNGAILSP DHGSSKGGFS PSDLGQEWSS PESGNSQIAR GMKGCIEWPH NSQKKSLKAK LLQARTESQK VQLRQVLKQK I

Best Arabidopsis Sequence Match ( AT1G50660.1 )
(BLAST)

001: MKVTGKPYST ATLPAFESDK NLFSHGPDLR AIQRATTVTK RRARNPSLTR QRRSGPSGGR RSRPETPLLK WKVEDRNKER SGVVEDDDYE DDNHQVARSE
101: TTRRKDRRKI ARPVSVRKLA AGLWRLQVPD ASSSGGERKG KEGLGFQGNG GYMGVPYLYH HSDKPSGGQS NKIRQNPSTI ATTKNGFLCK LEPSMPFPHS
201: AMEGATKWDP VCLDTMEEVH QIYSNMKRID QQVNAVSLVS SLEAELEEAH ARIEDLESEK RSHKKKLEQF LRKVSEERAA WRSREHEKVR AIIDDMKTDM
301: NREKKTRQRL EIVNHKLVNE LADSKLAVKR YMQDYEKERK ARELIEEVCD ELAKEIGEDK AEIEALKRES MSLREEVDDE RRMLQMAEVW REERVQMKLI
401: DAKVALEERY SQMNKLVGDL ESFLRSRDIV TDVKEVREAE LLRETAASVN IQEIKEFTYV PANPDDIYAV FEEMNLGEAH DREMEKSVAY SPISHDSKVH
501: TVSLDANMMN KKGRHSDAYT HQNGDIEEDD SGWETVSHLE EQGSSYSPDG SIPSVNNKNH NHRHSNASSG GTESLGKVWD DTMTPTTEIS EVCSIPRRSS
601: KKVSSIAKLW RSTGASNGDR DSNYKVISME GMNGGRVSNG RKSSAGMVSP DRVSSKGGFS PMMDLVGQWN SSPESANHPH VNRGGMKGCI EWPRGAQKSS
701: LKSKLIEARI ESQKVQLKHV LKQRI

Arabidopsis Description

Actin cytoskeleton-regulatory complex pan-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LPT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.