Factsheet for PGSC0003DMT400042430

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080520.2.1	Tomato	nucleus	90.76	90.05
GSMUA_Achr6P00380_001	Banana	nucleus	27.55	40.42
GSMUA_Achr7P00230_001	Banana	nucleus	31.21	39.76
KRH20862	Soybean	cytosol	16.56	38.66
GSMUA_Achr8P01540_001	Banana	nucleus	29.46	36.56
VIT_10s0116g01830.t01	Wine grape	nucleus	42.83	36.5
KRH02074	Soybean	plastid	23.41	34.67
PGSC0003DMT400057488	Potato	nucleus	38.06	34.54
GSMUA_Achr6P19720_001	Banana	nucleus	38.06	34.09
GSMUA_Achr10P...	Banana	nucleus, plastid	38.22	34.04
KRH51081	Soybean	plastid	24.2	34.0
GSMUA_Achr2P03040_001	Banana	nucleus	24.36	33.41
GSMUA_Achr9P30230_001	Banana	nucleus, plastid	36.47	32.12
PGSC0003DMT400071667	Potato	nucleus	34.55	31.86
Zm00001d012593_P001	Maize	plastid	30.25	31.72
TraesCS1B01G329400.1	Wheat	plastid	32.96	31.51
TraesCS1D01G317000.1	Wheat	nucleus, plastid	32.8	31.35
Zm00001d026344_P001	Maize	plastid	34.24	31.3
TraesCS1A01G317000.1	Wheat	plastid	32.8	31.16
EES12886	Sorghum	plastid	34.08	30.92
KRH11424	Soybean	nucleus, plastid	18.95	30.91
HORVU1Hr1G066770.1	Barley	mitochondrion, plasma membrane	32.8	30.52
Zm00001d038595_P001	Maize	nucleus, plastid	32.48	30.27
Zm00001d002252_P001	Maize	plastid	32.96	30.17
EES19759	Sorghum	plastid	32.01	30.09
TraesCS2B01G492000.1	Wheat	plastid	32.8	30.07
Os04t0625000-01	Rice	nucleus	33.28	30.03
Zm00001d043218_P001	Maize	plastid	31.85	29.72
TraesCS2A01G469100.1	Wheat	plastid	32.64	29.58
TraesCS2D01G469200.1	Wheat	plastid	32.48	29.52
EES01592	Sorghum	plastid	31.53	29.29
Os08t0190700-00	Rice	nucleus	27.39	29.01
GSMUA_Achr4P23750_001	Banana	cytosol	17.83	27.45
OQU80028	Sorghum	plastid	28.03	26.67
KRH36516	Soybean	plastid	24.36	26.2
KRH11499	Soybean	plastid	27.71	25.89
Zm00001d000005_P002	Maize	plastid	28.18	25.69
TraesCS7D01G288600.1	Wheat	plastid	25.96	25.35
TraesCS7A01G295000.1	Wheat	plastid	25.32	25.32
TraesCS7B01G197400.1	Wheat	plastid	25.64	25.0
HORVU7Hr1G065950.7	Barley	vacuole	25.64	24.47
PGSC0003DMT400067737	Potato	nucleus	18.95	20.84
PGSC0003DMT400015076	Potato	nucleus	18.79	20.74
PGSC0003DMT400072353	Potato	plastid	19.59	18.78
PGSC0003DMT400000259	Potato	nucleus	16.08	15.47
PGSC0003DMT400032084	Potato	nucleus	15.61	14.45

Protein Annotations

EnsemblPlants:PGSC0003DMT400042430	EnsemblPlantsGene:PGSC0003DMG400016454	EntrezGene:102595875	ncoils:Coil	PANTHER:PTHR31071	PANTHER:PTHR31071:SF2
PGSC:PGSC0003DMG400016454	RefSeq:XP_006348115.1	SEG:seg	UniParc:UPI00029553A8	UniProt:M1BD09	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400016454]

Coordinates

chr2:-:36320883..36323751

Molecular Weight (calculated)

71271.8 Da

IEP (calculated)

7.890

GRAVY (calculated)

-0.635

Length

628 amino acids

Sequence
(BLAST)

001: MKISDGIASS IDCQLTTDHK LHHRRKKTRT PVDGDRRRVK GESGSASANQ FLVSKFNNPL MEMEYRGFEL FNGGAKMGVS ARKLAAGLWH LAAEFDSAGG
101: SCGGMKRQCV SIHPLPSWIP IPKSVMEGAT KWDPGHYREV NHSTNLVKLY ERATTSLAPA LQLVELIRAR IHIEELEADR RRLRRKFKHF VRKLNEERTS
201: WMRKECQKMH ALIDGLKDDL RRERRNCKQL DIANSKLLVD LADSKLSSRQ YMHDYEKERK SRELLEDVCN ELVKEIEEDR AEIEALKSES ARLEEEVEEE
301: RKMLQLAEVW REERVQMKLI DAKLLLEEKY CLMSNLISEL QSFLRANNVT VDMTDLIEVQ VVKQLVDSLN IQEIKEFSSS SPLLNDIYTS SIICEASKLG
401: TNTFADYSTP CHSSAIQIVG TEVSKTCAMN TSSECLNGVI DHEESCKHEN GRETVTQAED QFSNNTVGET EHSVNCTDRG RYLLCGKVNH EQKSGSLDFE
501: TRDISSVLPK KPKKKGSSFR KLWRSSLSND DFCKTISHDD SGRFSNGSTS NVDVVLSENV PAERALAYQD FVNHCCSGGP RNPHTARAMK GCIEWPRGIP
601: KHGLKSKLLE ARIESQKSQL RSVLKHLN

Best Arabidopsis Sequence Match ( AT1G50660.1 )
(BLAST)

001: MKVTGKPYST ATLPAFESDK NLFSHGPDLR AIQRATTVTK RRARNPSLTR QRRSGPSGGR RSRPETPLLK WKVEDRNKER SGVVEDDDYE DDNHQVARSE
101: TTRRKDRRKI ARPVSVRKLA AGLWRLQVPD ASSSGGERKG KEGLGFQGNG GYMGVPYLYH HSDKPSGGQS NKIRQNPSTI ATTKNGFLCK LEPSMPFPHS
201: AMEGATKWDP VCLDTMEEVH QIYSNMKRID QQVNAVSLVS SLEAELEEAH ARIEDLESEK RSHKKKLEQF LRKVSEERAA WRSREHEKVR AIIDDMKTDM
301: NREKKTRQRL EIVNHKLVNE LADSKLAVKR YMQDYEKERK ARELIEEVCD ELAKEIGEDK AEIEALKRES MSLREEVDDE RRMLQMAEVW REERVQMKLI
401: DAKVALEERY SQMNKLVGDL ESFLRSRDIV TDVKEVREAE LLRETAASVN IQEIKEFTYV PANPDDIYAV FEEMNLGEAH DREMEKSVAY SPISHDSKVH
501: TVSLDANMMN KKGRHSDAYT HQNGDIEEDD SGWETVSHLE EQGSSYSPDG SIPSVNNKNH NHRHSNASSG GTESLGKVWD DTMTPTTEIS EVCSIPRRSS
601: KKVSSIAKLW RSTGASNGDR DSNYKVISME GMNGGRVSNG RKSSAGMVSP DRVSSKGGFS PMMDLVGQWN SSPESANHPH VNRGGMKGCI EWPRGAQKSS
701: LKSKLIEARI ESQKVQLKHV LKQRI

Arabidopsis Description

Actin cytoskeleton-regulatory complex pan-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LPT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.