Factsheet for PGSC0003DMT400057488

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064580.2.1	Tomato	nucleus	93.93	96.58
PGSC0003DMT400071667	Potato	nucleus	65.9	66.96
VIT_19s0090g00370.t01	Wine grape	plastid	57.66	55.65
KRH73733	Soybean	nucleus	55.35	55.43
KRH14411	Soybean	nucleus	54.77	54.93
KRG98777	Soybean	nucleus	54.62	54.08
Bra018866.1-P	Field mustard	nucleus	52.02	53.49
KRH46168	Soybean	nucleus	53.47	52.93
CDY37111	Canola	nucleus	51.88	52.87
AT1G50660.1	Thale cress	nucleus	55.35	52.83
CDY22812	Canola	nucleus	50.29	52.73
GSMUA_Achr6P00380_001	Banana	nucleus	31.5	50.93
GSMUA_Achr7P00230_001	Banana	nucleus	35.84	50.3
CDY25414	Canola	mitochondrion	44.65	48.51
Bra035788.1-P	Field mustard	mitochondrion	44.65	48.51
AT3G20350.1	Thale cress	plastid	47.11	48.44
CDY29821	Canola	mitochondrion	43.93	47.57
GSMUA_Achr8P01540_001	Banana	nucleus	34.54	47.23
GSMUA_Achr6P19720_001	Banana	nucleus	47.83	47.22
GSMUA_Achr10P...	Banana	nucleus, plastid	47.11	46.24
GSMUA_Achr2P03040_001	Banana	nucleus	29.48	44.54
GSMUA_Achr9P30230_001	Banana	nucleus, plastid	45.66	44.32
Zm00001d026344_P001	Maize	plastid	43.93	44.25
EES12886	Sorghum	plastid	43.64	43.64
Zm00001d002252_P001	Maize	plastid	42.92	43.29
Os04t0625000-01	Rice	nucleus	43.5	43.25
TraesCS1B01G329400.1	Wheat	plastid	40.32	42.47
TraesCS1D01G317000.1	Wheat	nucleus, plastid	39.88	42.01
TraesCS1A01G317000.1	Wheat	plastid	40.03	41.91
TraesCS2B01G492000.1	Wheat	plastid	41.47	41.9
TraesCS2A01G469100.1	Wheat	plastid	41.62	41.56
TraesCS2D01G469200.1	Wheat	plastid	41.33	41.39
HORVU1Hr1G066770.1	Barley	mitochondrion, plasma membrane	40.17	41.19
EES19759	Sorghum	plastid	38.44	39.82
Os08t0190700-00	Rice	nucleus	34.1	39.8
Zm00001d012593_P001	Maize	plastid	34.25	39.57
Zm00001d038595_P001	Maize	nucleus, plastid	38.29	39.32
OQU80028	Sorghum	plastid	37.43	39.24
PGSC0003DMT400042430	Potato	nucleus	34.54	38.06
EES01592	Sorghum	plastid	36.99	37.87
Zm00001d000005_P002	Maize	plastid	37.14	37.3
Zm00001d043218_P001	Maize	plastid	36.27	37.3
TraesCS7D01G288600.1	Wheat	plastid	32.66	35.15
TraesCS7B01G197400.1	Wheat	plastid	32.66	35.09
TraesCS7A01G295000.1	Wheat	plastid	31.79	35.03
HORVU7Hr1G065950.7	Barley	vacuole	31.79	33.43
GSMUA_Achr4P23750_001	Banana	cytosol	19.51	33.09
PGSC0003DMT400072353	Potato	plastid	21.82	23.05
PGSC0003DMT400015076	Potato	nucleus	18.93	23.02
PGSC0003DMT400067737	Potato	nucleus	18.79	22.77
PGSC0003DMT400000259	Potato	nucleus	15.9	16.85
PGSC0003DMT400032084	Potato	nucleus	15.75	16.08

Protein Annotations

EnsemblPlants:PGSC0003DMT400057488	EnsemblPlantsGene:PGSC0003DMG400022320	EntrezGene:102581959	ncoils:Coil	PANTHER:PTHR31071	PANTHER:PTHR31071:SF2
PGSC:PGSC0003DMG400022320	RefSeq:XP_006346217.1	SEG:seg	UniParc:UPI0002947F2F	UniProt:M1C163	MapMan:35.1

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022320]

Coordinates

chr7:+:54836502..54840067

Molecular Weight (calculated)

78971.9 Da

IEP (calculated)

7.852

GRAVY (calculated)

-0.890

Length

692 amino acids

Sequence
(BLAST)

001: MKVTANNRAE LPAIASFKLV NPLPDSDLLQ NPFCSRKPPR RKIKNSGGAG VRLRRDIPGG KRSRPNTPLL RWKYNEDVND NACTWEDKST VELGRKSGRK
101: VRNLVSARKL AAGLWRLQLP EVPNIPAQKL PQAGHIDLPF FNHHHIKEND SHVQAGHIDL PFFDHHHIKE NDSHIDDSVQ SPRSVSGPRY GLYHKLEPSF
201: QYPNSAMEGA TKWDPVGWTI AEEIKEIYGH QKVPNKQSKT AAMISTLEAE LEQARTRIHQ LEMERRSSKK KLELFLRKLS EEKAAWRSRE HEKIRAIIDD
301: MKADLSREKR NRQRLETVNS KLVNELADAK LSAKRYFQDY EKERKGRELI EEVCEELAKE IGEDKAEVEA LKRESHSLRE EVDEERKMLQ MAEVWREERV
401: QMKLVDAKVT LEEKYSQMNR LIAELESFLG SRGMNPDEEV IKRAEQLKQE AASVNIRDIS EFTYEPPNPD DIFSVFEDLN FVENNEREVE PCPAYSSASH
501: PSKICTFSPD DGAYNKDNFL RHSLAYNQSD LEEEGSEWET VSHLDEQGSS YSAEGSVCSV NKNCRHSNAS MEISDVYSGQ GRQLKKVSSI SRLWKSNGDN
601: YKKISVEGIN GRLSNGRLSN DATLSPDCGS SKGEFSPSGS SLDSGNPQIT RGMKGCIDWP RNSHKHSLKA KLLEARMESQ KVQLRHVLKQ KI

Best Arabidopsis Sequence Match ( AT1G50660.1 )
(BLAST)

001: MKVTGKPYST ATLPAFESDK NLFSHGPDLR AIQRATTVTK RRARNPSLTR QRRSGPSGGR RSRPETPLLK WKVEDRNKER SGVVEDDDYE DDNHQVARSE
101: TTRRKDRRKI ARPVSVRKLA AGLWRLQVPD ASSSGGERKG KEGLGFQGNG GYMGVPYLYH HSDKPSGGQS NKIRQNPSTI ATTKNGFLCK LEPSMPFPHS
201: AMEGATKWDP VCLDTMEEVH QIYSNMKRID QQVNAVSLVS SLEAELEEAH ARIEDLESEK RSHKKKLEQF LRKVSEERAA WRSREHEKVR AIIDDMKTDM
301: NREKKTRQRL EIVNHKLVNE LADSKLAVKR YMQDYEKERK ARELIEEVCD ELAKEIGEDK AEIEALKRES MSLREEVDDE RRMLQMAEVW REERVQMKLI
401: DAKVALEERY SQMNKLVGDL ESFLRSRDIV TDVKEVREAE LLRETAASVN IQEIKEFTYV PANPDDIYAV FEEMNLGEAH DREMEKSVAY SPISHDSKVH
501: TVSLDANMMN KKGRHSDAYT HQNGDIEEDD SGWETVSHLE EQGSSYSPDG SIPSVNNKNH NHRHSNASSG GTESLGKVWD DTMTPTTEIS EVCSIPRRSS
601: KKVSSIAKLW RSTGASNGDR DSNYKVISME GMNGGRVSNG RKSSAGMVSP DRVSSKGGFS PMMDLVGQWN SSPESANHPH VNRGGMKGCI EWPRGAQKSS
701: LKSKLIEARI ESQKVQLKHV LKQRI

Arabidopsis Description

Actin cytoskeleton-regulatory complex pan-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LPT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.