Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g074190.2.1 | Tomato | nucleus | 88.75 | 93.17 |
| PGSC0003DMT400067737 | Potato | nucleus | 62.57 | 62.35 |
| VIT_06s0080g00930.t01 | Wine grape | plastid | 46.57 | 40.64 |
| KRH25284 | Soybean | plastid | 38.66 | 33.38 |
| KRH30384 | Soybean | plastid | 38.66 | 33.23 |
| PGSC0003DMT400072353 | Potato | plastid | 36.03 | 31.3 |
| Os02t0506100-00 | Rice | plastid | 21.97 | 28.67 |
| GSMUA_Achr6P16290_001 | Banana | nucleus | 30.58 | 28.2 |
| Bra006620.1-P | Field mustard | nucleus | 21.44 | 27.05 |
| CDX70996 | Canola | nucleus | 22.14 | 26.53 |
| HORVU2Hr1G069400.8 | Barley | nucleus | 23.73 | 26.52 |
| CDX88802 | Canola | nucleus | 21.62 | 26.28 |
| Bra002404.1-P | Field mustard | nucleus | 22.14 | 26.03 |
| CDX92367 | Canola | mitochondrion, plastid | 21.79 | 25.83 |
| AT5G22310.1 | Thale cress | nucleus | 21.62 | 25.57 |
| CDY67997 | Canola | mitochondrion, plastid | 20.91 | 25.27 |
| TraesCS2A01G282200.1 | Wheat | nucleus | 24.78 | 24.91 |
| TraesCS2D01G281000.1 | Wheat | nucleus, plastid | 24.43 | 24.56 |
| TraesCS2B01G299400.1 | Wheat | nucleus, plastid | 23.55 | 24.06 |
| EES11990 | Sorghum | nucleus | 23.9 | 23.94 |
| Zm00001d000402_P001 | Maize | mitochondrion | 23.02 | 23.91 |
| TraesCS7D01G134000.1 | Wheat | nucleus | 24.25 | 23.83 |
| Zm00001d003996_P001 | Maize | nucleus | 23.73 | 23.73 |
| TraesCS7A01G134600.1 | Wheat | nucleus | 24.08 | 23.66 |
| TraesCS7B01G035800.1 | Wheat | nucleus | 23.9 | 23.53 |
| Os04t0382800-00 | Rice | nucleus | 23.55 | 23.47 |
| Zm00001d025208_P002 | Maize | nucleus | 24.08 | 23.38 |
| KXG30263 | Sorghum | mitochondrion | 24.96 | 22.83 |
| GSMUA_Achr6P08260_001 | Banana | nucleus | 20.21 | 20.07 |
| PGSC0003DMT400071667 | Potato | nucleus | 23.73 | 19.82 |
| PGSC0003DMT400057488 | Potato | nucleus | 23.02 | 18.93 |
| PGSC0003DMT400042430 | Potato | nucleus | 20.74 | 18.79 |
| PGSC0003DMT400032084 | Potato | nucleus | 20.74 | 17.4 |
| PGSC0003DMT400000259 | Potato | nucleus | 18.28 | 15.93 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400015076 | EnsemblPlantsGene:PGSC0003DMG400005891 | EntrezGene:102594396 | ncoils:Coil | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF16 |
| PGSC:PGSC0003DMG400005891 | RefSeq:XP_006361148.1 | SEG:seg | UniParc:UPI0002949E5C | UniProt:M1A5E4 | MapMan:35.1 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005891]
Coordinates
chr6:-:54747556..54750834
Molecular Weight (calculated)
65450.0 Da
IEP (calculated)
6.560
GRAVY (calculated)
-0.940
Length
569 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSRSTSLH NDKHMQTEGS DDLSVSARKL ASTLWETKLK DLEEMGWKER VSKLGSAALQ FHDPVSERTE RSKVRSRHRR RKSTKADLSN QNGCSIELDR
101: TQNHGQTLSR HHLKDVCHGL TTCKELLKVL SHVWNLKDQK STCSSLFAAI NTELDWLCDE VSKLIREHRH NHSEVDVLLK KFEEEKMAWK VKEQDKIHTA
201: ITSVAREFKI EKKLRKQTER LNKKLGRELA DTKALLSKAV KELEGEKRDR DILEQVCDEL ARGLGEDRAE MEELKRQSAK IREEVEMEQK ILQLADVMRE
301: ERVQMKLSEA KYQFEEKNTV VDKLRNELEA YLRSKKGQEQ GCDSLNYETI NELERHLRET LPSTHHYRDK EKADVEILDK EEDGDEGDST DSDLHSIELN
401: MGDNSKSHQW CTALQNDPNR LLISDQNKGR RSISEKFPVQ STSLERETSD GIEWEFCVGE KENVNTIDGG ISNFLNNGGT PEFSSQAWKK DHADETERYK
501: MIKNLCDRII SASRITASQG FSGPTKNCSQ QKFSANDPNK VMVRALPSCR EKLEGIPEII ALSCRELLE
101: TQNHGQTLSR HHLKDVCHGL TTCKELLKVL SHVWNLKDQK STCSSLFAAI NTELDWLCDE VSKLIREHRH NHSEVDVLLK KFEEEKMAWK VKEQDKIHTA
201: ITSVAREFKI EKKLRKQTER LNKKLGRELA DTKALLSKAV KELEGEKRDR DILEQVCDEL ARGLGEDRAE MEELKRQSAK IREEVEMEQK ILQLADVMRE
301: ERVQMKLSEA KYQFEEKNTV VDKLRNELEA YLRSKKGQEQ GCDSLNYETI NELERHLRET LPSTHHYRDK EKADVEILDK EEDGDEGDST DSDLHSIELN
401: MGDNSKSHQW CTALQNDPNR LLISDQNKGR RSISEKFPVQ STSLERETSD GIEWEFCVGE KENVNTIDGG ISNFLNNGGT PEFSSQAWKK DHADETERYK
501: MIKNLCDRII SASRITASQG FSGPTKNCSQ QKFSANDPNK VMVRALPSCR EKLEGIPEII ALSCRELLE
001: MPRQNQSVEN LLLLGKIRKR GCSSPTSSTS SILREGYRFK RAIVVGKRGG STTPVPTWRL MGRSPSPRAS GALHAAASPS SHCGSKTGKV SAPAPVSARK
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW
Arabidopsis Description
At3g11590/F24K9_26 [Source:UniProtKB/TrEMBL;Acc:Q9CAW9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.