Factsheet for PGSC0003DMT400052647

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009054
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400034833
PGSC0003DMT400042062
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06390.1	PGSC0003DMT400009054	AT3G50910.1	21798944
AT2G30980.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT2G30980.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT2G30980.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT2G30980.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT2G30980.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT2G30980.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT2G30980.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT2G30980.1	PGSC0003DMT400014123	AT2G41100.1	17360592
AT2G30980.1	PGSC0003DMT400018569	AT2G41100.1	17360592
AT2G30980.1	PGSC0003DMT400046278	AT2G41100.1	17360592
AT2G30980.1	PGSC0003DMT400054299	AT2G41100.1	17360592
AT2G30980.1	PGSC0003DMT400058435	AT2G41100.1	17360592
AT2G30980.1	PGSC0003DMT400070437	AT2G41100.1	17360592
AT2G30980.1	PGSC0003DMT400097662	AT2G41100.1	17360592
AT2G30980.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT2G30980.1	PGSC0003DMT400042062	AT4G14640.1	17360592
AT2G30980.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT2G30980.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT2G30980.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT2G30980.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT2G30980.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT2G30980.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT2G30980.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g055200.2.1	Tomato	cytosol	98.85	98.17
CDY66894	Canola	cytosol	76.27	88.5
Os01t0205700-01	Rice	cytosol	47.47	88.41
TraesCS3A01G136500.1	Wheat	cytosol	75.58	86.77
PGSC0003DMT400073091	Potato	cytosol	76.27	86.65
VIT_12s0028g01810.t01	Wine grape	cytosol	79.49	85.82
AT1G06390.1	Thale cress	cytosol	80.18	85.5
AT2G30980.1	Thale cress	cytosol	80.41	84.71
PGSC0003DMT400068764	Potato	cytosol	74.19	84.29
KRH25797	Soybean	cytosol	81.34	84.05
KRH55721	Soybean	cytosol	81.11	84.01
Bra021685.1-P	Field mustard	cytosol	79.03	83.66
CDX97773	Canola	cytosol	79.03	83.66
Os05t0207500-01	Rice	cytosol	77.19	83.33
EES00093	Sorghum	cytosol	76.73	82.43
CDY52692	Canola	cytosol, mitochondrion, nucleus	21.43	82.3
TraesCS1D01G129000.2	Wheat	cytosol	75.81	81.84
TraesCS1B01G142300.1	Wheat	cytosol	75.81	81.84
TraesCS1A01G125000.1	Wheat	cytosol	75.81	81.84
Zm00001d008893_P001	Maize	cytosol	76.27	81.53
CDY10766	Canola	extracellular, plasma membrane, vacuole	41.71	80.8
Bra018285.1-P	Field mustard	cytosol	65.67	80.74
KRH27067	Soybean	cytosol	76.04	80.68
KRH22265	Soybean	cytosol	77.19	80.34
HORVU3Hr1G026020.3	Barley	mitochondrion	75.81	79.47
TraesCS3D01G137200.1	Wheat	cytosol	72.81	78.8
Zm00001d039407_P001	Maize	cytosol	75.81	76.69
PGSC0003DMT400080607	Potato	cytosol	70.97	75.12
PGSC0003DMT400001392	Potato	cytosol	69.82	73.9
HORVU6Hr1G046490.1	Barley	cytosol	20.74	71.43
PGSC0003DMT400007088	Potato	cytosol	67.28	71.39
HORVU6Hr1G008360.2	Barley	mitochondrion, peroxisome, plasma membrane	34.79	67.11
HORVU2Hr1G051860.1	Barley	cytosol	25.12	64.88
PGSC0003DMT400064027	Potato	cytosol	56.91	64.49
PGSC0003DMT400017984	Potato	cytosol, mitochondrion	63.36	59.14
PGSC0003DMT400071378	Potato	cytosol, mitochondrion	64.52	58.95
TraesCS5A01G259000.1	Wheat	endoplasmic reticulum, extracellular, plastid	11.75	44.35
TraesCS1B01G361800.1	Wheat	endoplasmic reticulum, extracellular, plastid	11.52	43.48
TraesCS5B01G230700.1	Wheat	endoplasmic reticulum, extracellular, plastid	11.29	41.88
TraesCS4A01G365100.1	Wheat	endoplasmic reticulum, extracellular, plastid	11.06	41.03
PGSC0003DMT400064191	Potato	cytosol	23.96	31.23

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102604854	MapMan:11.3.2.3	MapMan:18.4.3.4	Gene3D:3.30.200.20	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1BTR7	PFAM:PF00069
EnsemblPlantsGene:PGSC0003DMG400020436	PGSC:PGSC0003DMG400020436	EnsemblPlants:PGSC0003DMT400052647	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24057	PANTHER:PTHR24057:SF12	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI00029652EE	RefSeq:XP_006348884.1	SEG:seg	:	:

Description

Glycogen synthase kinase-3 beta [Source:PGSC_GENE;Acc:PGSC0003DMG400020436]

Coordinates

chr7:+:50325835..50330797

Molecular Weight (calculated)

49024.3 Da

IEP (calculated)

8.468

GRAVY (calculated)

-0.302

Length

434 amino acids

Sequence
(BLAST)

001: MASIPLGPQH HNPPENHHHH HLQPPQLQQQ QLVNREQGGG GAAVRNTVAG ARPEMESEKE MSAAVVEGNG AVTGHIISTT IGGKNGEPKR TISYMAERVV
101: GTGSFGIVFQ AKCLETGETV AIKKVLQDKR YKNRELQLMR LMDHPNVITL KHCFFSTTSR DELFLNLVMD YVPESLYKVL KHYSNSNQRM PLIYVKLYMY
201: QIFRGLAYIH NVPRICHRDV KPQNLLVDPL THQVKLCDFG SAKVLVNGEA NISYICSRYY RAPELIFGAT EYTTSIDIWS AGCVLAELLL GQPLFPGENA
301: VDQLVEIIKV LGTPTREEIR CMNPNYTDFR FPQIKAHPWH KVFHKRMPPE AIDLASRLLQ YSPSLRCTAL EACAHSFFDE LREPNARLPN GRPFPPLFNF
401: KQELTGASPD LVNKLIPEHV WRQLGLNFPF PGAT

Best Arabidopsis Sequence Match ( AT2G30980.1 )
(BLAST)

001: MTSIPLGPPQ PPSLAPQPPH LHGGDSLKRR PDIDNDKEMS AAVIEGNDAV TGHIISTTIG GKNGEPKQTI SYMAERVVGT GSFGIVFQAK CLETGESVAI
101: KKVLQDRRYK NRELQLMRLM DHPNVVSLKH CFFSTTTRDE LFLNLVMEYV PETLYRVLKH YTSSNQRMPI FYVKLYTYQI FRGLAYIHTA PGVCHRDVKP
201: QNLLVDPLTH QCKLCDFGSA KVLVKGEANI SYICSRYYRA PELIFGATEY TSSIDIWSAG CVLAELLLGQ PLFPGENSVD QLVEIIKVLG TPTREEIRCM
301: NPNYTDFRFP QIKAHPWHKV FHKRMPPEAI DLASRLLQYS PSLRCTALEA CAHPFFNELR EPNARLPNGR PLPPLFNFKQ ELSGASPELI NRLIPEHVRR
401: QMNGGFPFQA GP

Arabidopsis Description

ASK6SKdZeta [Source:UniProtKB/TrEMBL;Acc:A0A178W1X9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.