Factsheet for PGSC0003DMT400073091

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400036765
PGSC0003DMT400037454
PGSC0003DMT400068764
PGSC0003DMT400073091

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18710.1	PGSC0003DMT400068764	AT4G18710.1	18599455
AT4G18710.1	PGSC0003DMT400073091	AT4G18710.1	18599455
AT4G18710.1	PGSC0003DMT400036765	AT5G62000.1	18599455
AT4G18710.1	PGSC0003DMT400037454	AT5G62000.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g072300.2.1	Tomato	cytosol	100.0	100.0
PGSC0003DMT400068764	Potato	cytosol	93.98	93.98
VIT_10s0003g01480.t01	Wine grape	cytosol	91.1	91.58
CDY69647	Canola	cytosol	80.37	90.29
Bra013341.1-P	Field mustard	cytosol	87.96	89.84
CDX78886	Canola	cytosol	87.96	89.84
AT4G18710.1	Thale cress	cytosol	89.27	89.74
CDY70859	Canola	cytosol	87.7	89.57
CDY34051	Canola	cytosol	89.01	89.47
Bra012581.1-P	Field mustard	cytosol	87.43	89.3
Bra020994.1-P	Field mustard	cytosol	88.74	89.21
CDY64921	Canola	cytosol	87.17	89.04
CDX99437	Canola	cytosol	88.74	88.98
KRH61707	Soybean	cytosol	88.48	88.95
Os01t0205700-01	Rice	cytosol	53.93	88.41
KRH52380	Soybean	cytosol	87.43	87.89
KRH21245	Soybean	cytosol	85.08	86.9
KRH11042	Soybean	cytosol	86.13	86.58
TraesCS3A01G136500.1	Wheat	cytosol	84.56	85.45
CDY62551	Canola	cytosol	58.64	84.85
TraesCS1D01G129000.2	Wheat	cytosol	85.6	81.34
TraesCS1B01G142300.1	Wheat	cytosol	85.6	81.34
TraesCS1A01G125000.1	Wheat	cytosol	85.6	81.34
Os05t0207500-01	Rice	cytosol	84.56	80.35
EES00093	Sorghum	cytosol	84.29	79.7
Zm00001d008893_P001	Maize	cytosol	83.77	78.82
KRH42881	Soybean	cytosol	78.53	78.33
HORVU3Hr1G026020.3	Barley	mitochondrion	84.56	78.02
KRH58985	Soybean	cytosol	78.01	77.81
TraesCS3D01G137200.1	Wheat	cytosol	80.1	76.31
PGSC0003DMT400052647	Potato	cytosol	86.65	76.27
Zm00001d039407_P001	Maize	cytosol	83.25	74.13
PGSC0003DMT400001392	Potato	cytosol	77.75	72.44
PGSC0003DMT400080607	Potato	cytosol	77.49	72.2
PGSC0003DMT400007088	Potato	cytosol	74.35	69.44
HORVU6Hr1G046490.1	Barley	cytosol	22.51	68.25
HORVU6Hr1G008360.2	Barley	mitochondrion, peroxisome, plasma membrane	40.05	68.0
HORVU2Hr1G051860.1	Barley	cytosol	28.01	63.69
PGSC0003DMT400064027	Potato	cytosol	63.09	62.92
PGSC0003DMT400071378	Potato	cytosol, mitochondrion	74.35	59.79
PGSC0003DMT400017984	Potato	cytosol, mitochondrion	72.77	59.78
TraesCS5A01G259000.1	Wheat	endoplasmic reticulum, extracellular, plastid	13.09	43.48
TraesCS1B01G361800.1	Wheat	endoplasmic reticulum, extracellular, plastid	12.83	42.61
TraesCS5B01G230700.1	Wheat	endoplasmic reticulum, extracellular, plastid	12.57	41.03
TraesCS4A01G365100.1	Wheat	endoplasmic reticulum, extracellular, plastid	12.3	40.17
PGSC0003DMT400064191	Potato	cytosol	26.7	30.63

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102600959	MapMan:11.3.2.3	MapMan:18.4.3.4	Gene3D:3.30.200.20	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1CRI6	PFAM:PF00069
EnsemblPlantsGene:PGSC0003DMG400028428	PGSC:PGSC0003DMG400028428	EnsemblPlants:PGSC0003DMT400073091	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24057	PANTHER:PTHR24057:SF12	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI00027675A1	RefSeq:XP_006358115.1	:	:

Description

Glycogen synthase kinase-3 beta [Source:PGSC_GENE;Acc:PGSC0003DMG400028428]

Coordinates

chr2:+:31707793..31714938

Molecular Weight (calculated)

43316.7 Da

IEP (calculated)

8.111

GRAVY (calculated)

-0.203

Length

382 amino acids

Sequence
(BLAST)

001: MADDKEMSAP VMDGNDAVTG HIISTTIGGK NGEPKQTVSY MAERVVGTGS FGIVFQAKCL ENGETVAIKK VLQDRRYKNR ELQLMRTMDH TNVVCLKHCF
101: YSTTSTNELF LNLVMEYVPE TMYRVLKHYS NMNQRMPLIY VKLYTYQVFR GLAYMHTVAG VCHRDLKPQN VLVDPLTHQV KICDFGSAKV LVKGEANISY
201: ICSRFYRAPE LIFGATEYTT SIDIWSAGCV LAELLLGQPL FPGENAVDQL VEIIKVLGTP TREEIRCMNP NYTDFRFPQI KAHPWHKVFH KRMPPEAIDL
301: ASRLLQYSPS LRCTALEACA HPFFDELREP NARLPNGRPL PPLFNFKQEL SGASPDLVNR LIPDHIKRQM GLHLFASHGD MT

Best Arabidopsis Sequence Match ( AT4G18710.1 )
(BLAST)

001: MADDKEMPAA VVDGHDQVTG HIISTTIGGK NGEPKQTISY MAERVVGTGS FGIVFQAKCL ETGETVAIKK VLQDRRYKNR ELQLMRVMDH PNVVCLKHCF
101: FSTTSKDELF LNLVMEYVPE SLYRVLKHYS SANQRMPLVY VKLYMYQIFR GLAYIHNVAG VCHRDLKPQN LLVDPLTHQV KICDFGSAKQ LVKGEANISY
201: ICSRFYRAPE LIFGATEYTT SIDIWSAGCV LAELLLGQPL FPGENAVDQL VEIIKVLGTP TREEIRCMNP HYTDFRFPQI KAHPWHKIFH KRMPPEAIDF
301: ASRLLQYSPS LRCTALEACA HPFFDELREP NARLPNGRPF PPLFNFKQEV AGSSPELVNK LIPDHIKRQL GLSFLNQSGT

Arabidopsis Description

ASK7Shaggy-related protein kinase eta [Source:UniProtKB/Swiss-Prot;Acc:Q39011]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.