Factsheet for PGSC0003DMT400068764

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400036765
PGSC0003DMT400037454
PGSC0003DMT400068764
PGSC0003DMT400073091

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18710.1	PGSC0003DMT400068764	AT4G18710.1	18599455
AT4G18710.1	PGSC0003DMT400073091	AT4G18710.1	18599455
AT4G18710.1	PGSC0003DMT400036765	AT5G62000.1	18599455
AT4G18710.1	PGSC0003DMT400037454	AT5G62000.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g006070.2.1	Tomato	cytosol	99.74	99.74
PGSC0003DMT400073091	Potato	cytosol	93.98	93.98
VIT_10s0003g01480.t01	Wine grape	cytosol	87.96	88.42
CDY69647	Canola	cytosol	78.53	88.24
Bra013341.1-P	Field mustard	cytosol	85.34	87.17
CDX78886	Canola	cytosol	85.34	87.17
CDY70859	Canola	cytosol	85.34	87.17
AT4G18710.1	Thale cress	cytosol	86.65	87.11
Bra012581.1-P	Field mustard	cytosol	85.08	86.9
CDY64921	Canola	cytosol	85.08	86.9
CDY34051	Canola	cytosol	86.39	86.84
Bra020994.1-P	Field mustard	cytosol	86.13	86.58
CDX99437	Canola	cytosol	86.13	86.35
KRH61707	Soybean	cytosol	85.6	86.05
Os01t0205700-01	Rice	cytosol	52.36	85.84
KRH52380	Soybean	cytosol	84.56	85.0
KRH21245	Soybean	cytosol	82.72	84.49
KRH11042	Soybean	cytosol	83.51	83.95
TraesCS3A01G136500.1	Wheat	cytosol	81.94	82.8
CDY62551	Canola	cytosol	56.02	81.06
TraesCS1D01G129000.2	Wheat	cytosol	82.72	78.61
TraesCS1B01G142300.1	Wheat	cytosol	82.72	78.61
TraesCS1A01G125000.1	Wheat	cytosol	82.72	78.61
Os05t0207500-01	Rice	cytosol	82.2	78.11
KRH42881	Soybean	cytosol	77.23	77.02
EES00093	Sorghum	cytosol	81.41	76.98
KRH58985	Soybean	cytosol	76.7	76.5
Zm00001d008893_P001	Maize	cytosol	81.15	76.35
HORVU3Hr1G026020.3	Barley	mitochondrion	81.94	75.6
TraesCS3D01G137200.1	Wheat	cytosol	78.01	74.31
PGSC0003DMT400052647	Potato	cytosol	84.29	74.19
Zm00001d039407_P001	Maize	cytosol	80.1	71.33
PGSC0003DMT400001392	Potato	cytosol	76.44	71.22
PGSC0003DMT400080607	Potato	cytosol	76.18	70.98
PGSC0003DMT400007088	Potato	cytosol	74.08	69.19
HORVU6Hr1G046490.1	Barley	cytosol	21.73	65.87
HORVU6Hr1G008360.2	Barley	mitochondrion, peroxisome, plasma membrane	38.48	65.33
HORVU2Hr1G051860.1	Barley	cytosol	27.23	61.9
PGSC0003DMT400064027	Potato	cytosol	62.04	61.88
PGSC0003DMT400071378	Potato	cytosol, mitochondrion	73.04	58.74
PGSC0003DMT400017984	Potato	cytosol, mitochondrion	71.47	58.71
TraesCS5A01G259000.1	Wheat	endoplasmic reticulum, extracellular, plastid	13.35	44.35
TraesCS1B01G361800.1	Wheat	endoplasmic reticulum, extracellular, plastid	13.09	43.48
TraesCS5B01G230700.1	Wheat	endoplasmic reticulum, extracellular, plastid	12.57	41.03
TraesCS4A01G365100.1	Wheat	endoplasmic reticulum, extracellular, plastid	12.3	40.17
PGSC0003DMT400064191	Potato	cytosol	25.92	29.73

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102581305	MapMan:11.3.2.3	MapMan:18.4.3.4	Gene3D:3.30.200.20	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1CJG7	PFAM:PF00069
EnsemblPlantsGene:PGSC0003DMG400026744	PGSC:PGSC0003DMG400026744	EnsemblPlants:PGSC0003DMT400068764	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24057	PANTHER:PTHR24057:SF12	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002953ED0	RefSeq:XP_006367136.1	:	:

Description

Glycogen synthase kinase-3 beta [Source:PGSC_GENE;Acc:PGSC0003DMG400026744]

Coordinates

chr3:-:1272550..1279253

Molecular Weight (calculated)

43571.0 Da

IEP (calculated)

8.316

GRAVY (calculated)

-0.261

Length

382 amino acids

Sequence
(BLAST)

001: MADDKEMSAP VMDVNGGVTG HIISTTIGGK NGEPKQTVSY MAERIVGTGS FGVVFQAKCL ENGETVAIKK VLQDRRYKNR ELQLMRTMDN PNVVSLKHCF
101: YSTTSKNELF LNLVMEYVPE TMYRMLKHYS NMNQRMPLIY VKLYTYQVFR GLAYMHTVAD VCHRDLKPQN ILVDPVTHQV KICDFGSAKV LVKGEANISY
201: ICSRFYRAPE LIFGATEYTT SIDIWSAGCV LAELLLGQPL FPGENAVDQL VEIIKVLGTP TREEIRCMNP NYTDFRFPQI KAHPWHKVFH KRMPPEAIDL
301: ASRLLQYSPS LRCNALEACA HPFFDELREP NARLPHGRQL PPLFNFKQEL AGASPDLINR LIPDHIKRQM GLHHFTTRDD MT

Best Arabidopsis Sequence Match ( AT4G18710.1 )
(BLAST)

001: MADDKEMPAA VVDGHDQVTG HIISTTIGGK NGEPKQTISY MAERVVGTGS FGIVFQAKCL ETGETVAIKK VLQDRRYKNR ELQLMRVMDH PNVVCLKHCF
101: FSTTSKDELF LNLVMEYVPE SLYRVLKHYS SANQRMPLVY VKLYMYQIFR GLAYIHNVAG VCHRDLKPQN LLVDPLTHQV KICDFGSAKQ LVKGEANISY
201: ICSRFYRAPE LIFGATEYTT SIDIWSAGCV LAELLLGQPL FPGENAVDQL VEIIKVLGTP TREEIRCMNP HYTDFRFPQI KAHPWHKIFH KRMPPEAIDF
301: ASRLLQYSPS LRCTALEACA HPFFDELREP NARLPNGRPF PPLFNFKQEV AGSSPELVNK LIPDHIKRQL GLSFLNQSGT

Arabidopsis Description

ASK7Shaggy-related protein kinase eta [Source:UniProtKB/Swiss-Prot;Acc:Q39011]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.