Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g053930.2.1 | Tomato | cytosol | 97.33 | 97.99 |
| KRG92449 | Soybean | cytosol | 86.67 | 86.67 |
| VIT_05s0020g04420.t01 | Wine grape | cytosol | 86.0 | 86.58 |
| KRH34350 | Soybean | cytosol | 86.0 | 86.0 |
| KRH69070 | Soybean | cytosol | 85.33 | 85.33 |
| KRH31638 | Soybean | cytosol | 85.33 | 85.33 |
| PGSC0003DMT400046278 | Potato | cytosol | 42.67 | 83.12 |
| AT4G14640.1 | Thale cress | cytosol | 81.33 | 80.79 |
| GSMUA_Achr4P22570_001 | Banana | cytosol | 79.33 | 80.41 |
| GSMUA_Achr1P04700_001 | Banana | cytosol | 79.33 | 80.41 |
| GSMUA_Achr2P12680_001 | Banana | cytosol | 78.67 | 79.73 |
| GSMUA_Achr1P27230_001 | Banana | cytosol | 78.67 | 79.73 |
| PGSC0003DMT400054299 | Potato | cytosol | 60.0 | 79.65 |
| CDX92965 | Canola | cytosol | 81.33 | 79.22 |
| Bra001892.1-P | Field mustard | cytosol | 81.33 | 79.22 |
| PGSC0003DMT400018569 | Potato | cytosol | 78.67 | 79.19 |
| PGSC0003DMT400070437 | Potato | cytosol | 78.67 | 79.19 |
| PGSC0003DMT400058435 | Potato | cytosol | 78.67 | 79.19 |
| GSMUA_Achr7P01390_001 | Banana | cytosol | 78.0 | 79.05 |
| GSMUA_Achr6P24410_001 | Banana | cytosol | 78.0 | 78.52 |
| Bra033898.1-P | Field mustard | cytosol | 80.67 | 78.06 |
| CDY34215 | Canola | cytosol | 80.67 | 77.56 |
| Bra023786.1-P | Field mustard | cytosol | 80.67 | 77.56 |
| CDY06478 | Canola | cytosol | 78.0 | 77.48 |
| CDY10686 | Canola | cytosol | 80.0 | 77.42 |
| PGSC0003DMT400083971 | Potato | extracellular | 76.67 | 77.18 |
| Bra039723.1-P | Field mustard | cytosol | 77.33 | 75.82 |
| CDX94883 | Canola | cytosol | 54.0 | 72.97 |
| GSMUA_Achr5P09010_001 | Banana | cytosol | 72.0 | 72.97 |
| PGSC0003DMT400034833 | Potato | cytosol | 74.0 | 72.55 |
| PGSC0003DMT400014123 | Potato | mitochondrion | 58.0 | 71.31 |
| AT3G22930.1 | Thale cress | cytosol | 82.0 | 71.1 |
| CDY10325 | Canola | cytosol | 53.33 | 70.8 |
| CDY40824 | Canola | cytosol | 80.67 | 67.22 |
| Os03t0743500-02 | Rice | nucleus | 67.33 | 65.58 |
| KXG37587 | Sorghum | cytosol | 66.67 | 64.94 |
| PGSC0003DMT400083727 | Potato | cytosol | 63.33 | 64.63 |
| PGSC0003DMT400097662 | Potato | cytosol, mitochondrion | 71.33 | 61.85 |
| Zm00001d033980_P001 | Maize | cytosol | 54.67 | 52.23 |
| TraesCS5A01G382800.2 | Wheat | plastid | 62.67 | 50.27 |
| GSMUA_Achr3P25390_001 | Banana | cytosol | 60.67 | 49.73 |
| GSMUA_Achr1P14070_001 | Banana | cytosol | 70.67 | 46.9 |
| PGSC0003DMT400008152 | Potato | cytosol | 48.0 | 44.17 |
| PGSC0003DMT400070433 | Potato | cytosol | 42.0 | 42.86 |
| PGSC0003DMT400038352 | Potato | cytosol | 45.33 | 41.72 |
| PGSC0003DMT400010295 | Potato | cytosol, mitochondrion | 40.67 | 36.31 |
| PGSC0003DMT400041342 | Potato | cytosol, mitochondrion | 38.67 | 36.02 |
| PGSC0003DMT400063261 | Potato | cytosol | 36.67 | 34.16 |
| PGSC0003DMT400019291 | Potato | cytosol | 24.67 | 31.9 |
| KXG37588 | Sorghum | mitochondrion, nucleus | 0.67 | 0.73 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400042062 | EnsemblPlantsGene:PGSC0003DMG400016313 | EntrezGene:102584290 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23050 |
| PANTHER:PTHR23050:SF336 | PFAM:PF13499 | PFscan:PS50222 | PGSC:PGSC0003DMG400016313 | RefSeq:XP_006350654.1 | ScanProsite:PS00018 |
| SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI00029650FF | UniProt:M1BCF8 | MapMan:35.1 | : |
Description
Calmodulin NtCaM13 [Source:PGSC_GENE;Acc:PGSC0003DMG400016313]
Coordinates
chr6:+:40211384..40213357
Molecular Weight (calculated)
17040.9 Da
IEP (calculated)
3.719
GRAVY (calculated)
-0.517
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDILNNDQI VELQEAFSLF DRDGDGCITV EELATVIRSL DQNPTEEELQ DMITEVDSDG NGTIEFTEFL NLMAKKMKDT DAEEELKEAF KVFDKDQNGY
101: ISANELRHVM INLGEKLTDE EVDQMIREAD LDGDGQVNFD EFVKMMMNVG
101: ISANELRHVM INLGEKLTDE EVDQMIREAD LDGDGQVNFD EFVKMMMNVG
001: MEETALTKDQ ITEFKEAFCL FDKDGDGCIT VEELATVIRS LDQNPTEQEL HDIITEIDSD SNGTIEFAEF LNLMAKKLQE SDAEEELKEA FKVFDKDQNG
101: YISASELSHV MINLGEKLTD EEVEQMIKEA DLDGDGQVNY DEFVKMMINI D
101: YISASELSHV MINLGEKLTD EEVEQMIKEA DLDGDGQVNY DEFVKMMINI D
Arabidopsis Description
CML8Calmodulin-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:O23320]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.