Factsheet for PGSC0003DMT400095174

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400034833
PGSC0003DMT400042062
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G48010.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT2G48010.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT2G48010.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT2G48010.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT2G48010.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT2G48010.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT2G48010.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT2G48010.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT2G48010.1	PGSC0003DMT400042062	AT4G14640.1	17360592
AT2G48010.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT2G48010.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT2G48010.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT2G48010.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT2G48010.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT2G48010.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT2G48010.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67133	Soybean	cytosol	53.23	46.05
Solyc09g074240.1.1	Tomato	plasma membrane	96.2	39.66
GSMUA_Achr8P33610_001	Banana	plastid	51.33	39.36
VIT_07s0104g00840.t01	Wine grape	plasma membrane	73.76	29.62
KRH71493	Soybean	plasma membrane	70.34	29.6
KRH31961	Soybean	plasma membrane	70.34	29.41
AT2G48010.1	Thale cress	plasma membrane	67.68	28.85
KRG95456	Soybean	plasma membrane	63.12	28.82
CDX79672	Canola	plasma membrane	66.92	28.39
Bra023063.1-P	Field mustard	plasma membrane	66.92	28.25
CDX84563	Canola	plasma membrane	66.92	28.25
KRG95455	Soybean	plasma membrane	66.16	27.36
KRH67131	Soybean	plasma membrane	66.54	27.09
HORVU4Hr1G019460.1	Barley	plasma membrane	62.36	26.03
TraesCS4A01G205800.1	Wheat	plasma membrane	62.36	25.95
TraesCS4D01G106700.1	Wheat	plasma membrane	62.36	25.95
TraesCS4B01G109400.1	Wheat	plasma membrane	59.7	25.78
KXG29404	Sorghum	plasma membrane	61.6	25.39
Os01t0384300-00	Rice	plasma membrane	61.22	25.16
PGSC0003DMT400015429	Potato	plasma membrane	43.73	18.7
PGSC0003DMT400061181	Potato	plasma membrane	43.35	17.65
Zm00001d015163_P001	Maize	plasma membrane	30.42	14.9

Protein Annotations

Gene3D:1.10.510.10	MapMan:50.2.7	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
UniProt:M1DVQ7	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400044745	PGSC:PGSC0003DMG400044745	EnsemblPlants:PGSC0003DMT400095174	PIRSF:PIRSF000654
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27006	PANTHER:PTHR27006:SF36	InterPro:Prot_kinase_dom	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000296130D	SEG:seg	:	:

Description

Kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400044745]

Coordinates

chr9:-:51373241..51374032

Molecular Weight (calculated)

29064.7 Da

IEP (calculated)

5.814

GRAVY (calculated)

-0.179

Length

263 amino acids

Sequence
(BLAST)

001: MKNGSLHDHL FGTRHEKLSW GIRQKVAIGT ARGLAYLHYG AQPGIIHRDI KASNILLDES FEPKVADFGL AKFTPEGMTH LSTRVAGTMG YVAPEYALYG
101: QLTERSDVYS FGVVLLELLS GKKAIMEFKE GQPTLVTDWA WSLVREGRAL DVLEDSIPHL GPPEVMEKYV LVAVLCSHPQ LYARPTMDQV VNMLDAEIPV
201: PTIPERPISL IADLDDIERS VSSSGNSGNL STAAGYQAYI FERETPLADS DSVRARTLDH RSR

Best Arabidopsis Sequence Match ( AT2G48010.1 )
(BLAST)

001: MLFLRRIAVV FFVFTSFSAA QNSTCPLDFS VLEPFRRPKP DGATTCQYLL QGLRLLYSHH LRQTGSFLPP PESAASCWAA LQSSVAGFLP RFDVRSTCGF
101: QTPWISQGCM DITTRSQFES LIPNSSLATT AMRCNTSLES NTPCASCTQS LSAFQPYLSG PSLGNVSDCA SFPSIYAAAF ANSLGPTDKG TAKCLFQLDL
201: ASPTSSGANK VKVLVSSFSV LLVASVLVIT AWFWYCRRKK SKLLKPRDTS LEAGTQSRLD SMSESTTLVK FSFDEIKKAT NNFSRHNIIG RGGYGNVFKG
301: ALPDGTQVAF KRFKNCSAGG DANFAHEVEV IASIRHVNLL ALRGYCTATT PYEGHQRIIV CDLVSNGSLH DHLFGDLEAQ LAWPLRQRIA LGMARGLAYL
401: HYGAQPSIIH RDIKASNILL DERFEAKVAD FGLAKFNPEG MTHMSTRVAG TMGYVAPEYA LYGQLTEKSD VYSFGVVLLE LLSRRKAIVT DEEGQPVSVA
501: DWAWSLVREG QTLDVVEDGM PEKGPPEVLE KYVLIAVLCS HPQLHARPTM DQVVKMLESN EFTVIAIPQR PIPLVACREE IDRSVSSSSG SGKLTSPTGY
601: QAFSFGGDGP SGNTNTT

Arabidopsis Description

RKF3Probable LRR receptor-like serine/threonine-protein kinase RKF3 [Source:UniProtKB/Swiss-Prot;Acc:P93050]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.