Factsheet for VIT_07s0104g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G48010.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT2G48010.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT2G48010.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT2G48010.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT2G48010.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400095174	Potato	cytosol	29.62	73.76
KRH67133	Soybean	cytosol	32.98	71.05
Solyc09g074240.1.1	Tomato	plasma membrane	62.29	63.95
GSMUA_Achr8P33610_001	Banana	plastid	33.44	63.85
KRH71493	Soybean	plasma membrane	57.86	60.64
KRH31961	Soybean	plasma membrane	57.86	60.25
CDX79672	Canola	plasma membrane	56.64	59.84
Bra023063.1-P	Field mustard	plasma membrane	56.49	59.39
CDX84563	Canola	plasma membrane	56.49	59.39
AT2G48010.1	Thale cress	plasma membrane	55.73	59.16
KRG95455	Soybean	plasma membrane	55.88	57.55
VIT_14s0030g00350.t01	Wine grape	cytosol	47.48	56.86
KRG95456	Soybean	plasma membrane	49.62	56.42
KRH67131	Soybean	plasma membrane	55.57	56.35
TraesCS4B01G109400.1	Wheat	plasma membrane	49.31	53.04
TraesCS4D01G106700.1	Wheat	plasma membrane	50.38	52.22
TraesCS4A01G205800.1	Wheat	plasma membrane	50.08	51.9
HORVU4Hr1G019460.1	Barley	plasma membrane	49.31	51.27
Os01t0384300-00	Rice	plasma membrane	49.92	51.09
KXG29404	Sorghum	plasma membrane	48.85	50.16
VIT_12s0034g02200.t01	Wine grape	cytosol	17.56	44.92
Zm00001d015163_P001	Maize	plasma membrane	35.73	43.58
VIT_18s0001g01960.t01	Wine grape	plasma membrane	31.3	33.5
VIT_12s0034g02220.t01	Wine grape	plasma membrane	32.52	31.89

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100852842	wikigene:100852842	MapMan:18.4.1.23	Gene3D:3.30.200.20	ProteinID:CCB56797
ProteinID:CCB56797.1	UniProt:F6HQ41	EMBL:FN596005	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	EntrezGene:LOC100852842	wikigene:LOC100852842	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27006	PANTHER:PTHR27006:SF36	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002108E49	ArrayExpress:VIT_07s0104g00840
EnsemblPlantsGene:VIT_07s0104g00840	EnsemblPlants:VIT_07s0104g00840.t01	RefSeq:XP_003632362	RefSeq:XP_003632362.1	SEG:seg	:

Description

No Description!

Coordinates

chr7:-:1985371..1993846

Molecular Weight (calculated)

71788.9 Da

IEP (calculated)

6.350

GRAVY (calculated)

0.056

Length

655 amino acids

Sequence
(BLAST)

001: MSLFWFLLLE LCSTIFTTNL PPPVFNPEIF LKKRVKPSFD LWVDILGSGL CWWAPKTLTS FSFSSAQYNL APCPLDFEPL LNVTTFDVNA STQCQYVIQG
101: LRLVLATYLQ STGSFLPPIN SSESCWDSYQ SVVNNFTSNF NIRSDCGFET TWISEGCMNI TTRSQFDAVV SQATRADIVA SCNQSLENSS PCATCTTSLS
201: NLQAVYLTGS SVGNLTDCTA YPSIYAAGFA NYLGPTDPGT AKCLFNLNFA SGGSGNKRRG VVIVVVVVVC SVVFLAVIGG VWVFYRKRRE SRSVKREIVN
301: IEMGLESISG STTLIKFTID EIRQATRNFT RDNIIGRGGY GNVYKGVLKD GSEVAFKRFK NCSAAGDTNF AHEVEVIASV RHVNLVALRG YCTATTPLEG
401: HQRIIVCDLM KNGSLHDHLF GSTEKLSWPL RQKIALGTAR GLAYLHSGAQ PGIIHRDIKA SNILLDEKFE PKVADFGLAK FTPEGMTHLS TRVAGTMGYV
501: APEYALYGQL TERSDVYSFG VVLLELLSGK KALMVIGENQ PSLVTDWAWS LVRKGRAIDV VDNSMPELGS PEVMEKYVLV AVLCSHPQLY ARPAMDQVVK
601: ILETDLPVPS IPERPISIVA EMDDIERSVS SSDMGCISSS AGYQSFTFEG QQHSD

Best Arabidopsis Sequence Match ( AT2G48010.1 )
(BLAST)

001: MLFLRRIAVV FFVFTSFSAA QNSTCPLDFS VLEPFRRPKP DGATTCQYLL QGLRLLYSHH LRQTGSFLPP PESAASCWAA LQSSVAGFLP RFDVRSTCGF
101: QTPWISQGCM DITTRSQFES LIPNSSLATT AMRCNTSLES NTPCASCTQS LSAFQPYLSG PSLGNVSDCA SFPSIYAAAF ANSLGPTDKG TAKCLFQLDL
201: ASPTSSGANK VKVLVSSFSV LLVASVLVIT AWFWYCRRKK SKLLKPRDTS LEAGTQSRLD SMSESTTLVK FSFDEIKKAT NNFSRHNIIG RGGYGNVFKG
301: ALPDGTQVAF KRFKNCSAGG DANFAHEVEV IASIRHVNLL ALRGYCTATT PYEGHQRIIV CDLVSNGSLH DHLFGDLEAQ LAWPLRQRIA LGMARGLAYL
401: HYGAQPSIIH RDIKASNILL DERFEAKVAD FGLAKFNPEG MTHMSTRVAG TMGYVAPEYA LYGQLTEKSD VYSFGVVLLE LLSRRKAIVT DEEGQPVSVA
501: DWAWSLVREG QTLDVVEDGM PEKGPPEVLE KYVLIAVLCS HPQLHARPTM DQVVKMLESN EFTVIAIPQR PIPLVACREE IDRSVSSSSG SGKLTSPTGY
601: QAFSFGGDGP SGNTNTT

Arabidopsis Description

RKF3Probable LRR receptor-like serine/threonine-protein kinase RKF3 [Source:UniProtKB/Swiss-Prot;Acc:P93050]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.