CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G48010.1	CDX73678	AT3G51920.1	17360592
AT2G48010.1	CDX95314	AT3G51920.1	17360592
AT2G48010.1	CDY23174	AT3G51920.1	17360592
AT2G48010.1	CDY06478	AT4G14640.1	17360592
AT2G48010.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84563	Canola	plasma membrane	96.29	95.83
AT2G48010.1	Thale cress	plasma membrane	80.32	80.71
KRH67133	Soybean	cytosol	34.52	70.39
PGSC0003DMT400095174	Potato	cytosol	28.39	66.92
GSMUA_Achr8P33610_001	Banana	plastid	32.9	59.48
KRH31961	Soybean	plasma membrane	59.68	58.82
KRH71493	Soybean	plasma membrane	59.03	58.56
Solyc09g074240.1.1	Tomato	plasma membrane	60.0	58.31
KRG95456	Soybean	plasma membrane	53.23	57.29
VIT_07s0104g00840.t01	Wine grape	plasma membrane	59.84	56.64
KRG95455	Soybean	plasma membrane	57.26	55.82
KRH67131	Soybean	plasma membrane	57.1	54.8
TraesCS4B01G109400.1	Wheat	plasma membrane	50.81	51.72
TraesCS4A01G205800.1	Wheat	plasma membrane	52.26	51.27
TraesCS4D01G106700.1	Wheat	plasma membrane	52.1	51.11
HORVU4Hr1G019460.1	Barley	plasma membrane	51.29	50.48
Os01t0384300-00	Rice	plasma membrane	51.61	50.0
KXG29404	Sorghum	plasma membrane	50.48	49.06
Zm00001d015163_P001	Maize	plasma membrane	36.45	42.09
CDY34865	Canola	plasma membrane	34.19	33.97
CDY34663	Canola	plasma membrane	33.71	33.49

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.23	Gene3D:3.30.200.20	GO:A0A078CSE6	EnsemblPlants:CDX79672	ProteinID:CDX79672
ProteinID:CDX79672.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00132467001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27006	PANTHER:PTHR27006:SF36
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0004EF28A5	SEG:seg	:	:	:

Description

BnaC03g20080D

Coordinates

chrLK031818:+:1489757..1491702

Molecular Weight (calculated)

67983.6 Da

IEP (calculated)

8.561

GRAVY (calculated)

-0.056

Length

620 amino acids

Sequence
(BLAST)

001: MFLRRTSVVH ILLFFTAASS SLVAAQNSSC PLDFSILQPF KRPRPDGSTT CQYLLQGLRL VYSHHLRQTG SFSPPISSAS SCWDALQSSI AGFLPRFDVR
101: SRCGFQTPWI SQGCMNITTR SQFEALIPNS TLSTAVMRCN LSLESNTPCA SCTQSLSAFQ AYLTGASLGN VSDCTGFSSI YGAAFANRFG PTDKGTAKCL
201: FLLDLASSSG SGSGKKKVVK ILVPLFFILV VASALILWYY LKRKRDFKMR RMKLRQQRDS LEAGRLDSMS ESTTLVKFTF EEIKKATNNF SRHNIIGRGG
301: YGNVFKGVLQ DGTEVAFKRF KNCSANGDAN FAHEVEVIAS IRHVNLLALR GYCTATTAYE GHQRIIVCDL VSNGSLHDHL FGDSETHLPW PLRQTIALGM
401: ARGLAYLHYG AQPSIIHRDI KASNILLDER FEAKVADFGL AKFNPEGMTH MSTRVAGTMG YVAPEYALYG KLTEKSDVYS FGVVLLELLS GRKAIVTDEE
501: GQPVSVADWA WALVREGQTL DVVEDGMPEK GSPEVLEKYV LIAVLCSHPQ LHARPTMDQV VKMLESNEFT VISIPQRPIP LVACREEIDR SVSSSSGSGK
601: LTSPTGYQAF SFGADGPGHQ

Best Arabidopsis Sequence Match ( AT2G48010.1 )
(BLAST)

001: MLFLRRIAVV FFVFTSFSAA QNSTCPLDFS VLEPFRRPKP DGATTCQYLL QGLRLLYSHH LRQTGSFLPP PESAASCWAA LQSSVAGFLP RFDVRSTCGF
101: QTPWISQGCM DITTRSQFES LIPNSSLATT AMRCNTSLES NTPCASCTQS LSAFQPYLSG PSLGNVSDCA SFPSIYAAAF ANSLGPTDKG TAKCLFQLDL
201: ASPTSSGANK VKVLVSSFSV LLVASVLVIT AWFWYCRRKK SKLLKPRDTS LEAGTQSRLD SMSESTTLVK FSFDEIKKAT NNFSRHNIIG RGGYGNVFKG
301: ALPDGTQVAF KRFKNCSAGG DANFAHEVEV IASIRHVNLL ALRGYCTATT PYEGHQRIIV CDLVSNGSLH DHLFGDLEAQ LAWPLRQRIA LGMARGLAYL
401: HYGAQPSIIH RDIKASNILL DERFEAKVAD FGLAKFNPEG MTHMSTRVAG TMGYVAPEYA LYGQLTEKSD VYSFGVVLLE LLSRRKAIVT DEEGQPVSVA
501: DWAWSLVREG QTLDVVEDGM PEKGPPEVLE KYVLIAVLCS HPQLHARPTM DQVVKMLESN EFTVIAIPQR PIPLVACREE IDRSVSSSSG SGKLTSPTGY
601: QAFSFGGDGP SGNTNTT

Arabidopsis Description

RKF3Probable LRR receptor-like serine/threonine-protein kinase RKF3 [Source:UniProtKB/Swiss-Prot;Acc:P93050]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.