CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G48010.1	KRG89812	AT2G41090.1	17360592
AT2G48010.1	KRG94975	AT2G41090.1	17360592
AT2G48010.1	KRH18664	AT2G41090.1	17360592
AT2G48010.1	KRH31638	AT4G14640.1	17360592
AT2G48010.1	KRH69070	AT4G14640.1	17360592
AT2G48010.1	KRG89812	AT5G21274.1	17360592
AT2G48010.1	KRG94975	AT5G21274.1	17360592
AT2G48010.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67133	Soybean	cytosol	39.78	83.22
KRH67131	Soybean	plasma membrane	84.43	83.13
PGSC0003DMT400095174	Potato	cytosol	27.36	66.16
KRG95456	Soybean	plasma membrane	59.28	65.45
KRH31961	Soybean	plasma membrane	63.99	64.71
KRH71493	Soybean	plasma membrane	63.52	64.64
Solyc09g074240.1.1	Tomato	plasma membrane	57.86	57.68
CDX79672	Canola	plasma membrane	55.82	57.26
AT2G48010.1	Thale cress	plasma membrane	55.5	57.21
Bra023063.1-P	Field mustard	plasma membrane	55.97	57.14
CDX84563	Canola	plasma membrane	55.82	56.98
VIT_07s0104g00840.t01	Wine grape	plasma membrane	57.55	55.88
GSMUA_Achr8P33610_001	Banana	plastid	30.03	55.69
Os01t0384300-00	Rice	plasma membrane	47.96	47.66
TraesCS4B01G109400.1	Wheat	plasma membrane	45.44	47.45
TraesCS4A01G205800.1	Wheat	plasma membrane	46.23	46.52
KXG29404	Sorghum	plasma membrane	46.54	46.4
TraesCS4D01G106700.1	Wheat	plasma membrane	45.91	46.2
HORVU4Hr1G019460.1	Barley	plasma membrane	45.44	45.87
Zm00001d015163_P001	Maize	plasma membrane	33.02	39.11
KRH17996	Soybean	plasma membrane	32.55	33.77
KRH59164	Soybean	plasma membrane	25.47	33.68
KRH17993	Soybean	plasma membrane	30.19	33.1
KRH10412	Soybean	plasma membrane	33.65	32.97
KRH17995	Soybean	plasma membrane	31.6	32.58
KRH44057	Soybean	plasma membrane	33.8	32.53
KRH43048	Soybean	plasma membrane	30.97	29.8

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100819453	MapMan:18.4.1.23	Gene3D:3.30.200.20	EMBL:ACUP02012113	ncoils:Coil
EnsemblPlantsGene:GLYMA_19G152200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	UniProt:K7MYI5	EnsemblPlants:KRG95455
ProteinID:KRG95455	ProteinID:KRG95455.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27006	PANTHER:PTHR27006:SF36	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000233EFEC	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:41266551..41269270

Molecular Weight (calculated)

69848.3 Da

IEP (calculated)

6.453

GRAVY (calculated)

-0.086

Length

636 amino acids

Sequence
(BLAST)

001: MSFPFYFYIF SVLFLTLYLP PPSLAANHTV PCPLHVDVLR EVGGGRRPKF DSGTQCHYIL QALHLLQADY LRRSSLFVPP LNSSESCWKT FQSFINEFDP
101: SITDIRASCG FRTEWISQGC MNFTTKQEFE EIVPPNAIQP VVADCNQPLD NNAPCALCIT KLSSMLSYLT GTTVGNVTDC RAYTQIYAAS LSDQYGASDP
201: GTAKCLFGLD FSSSGSGGKR RKILIAVVSV FCVLALAVFA GLWAYLRFKK RKEVAGTTEL GLGSGLDSMN QSTTLIRFTF DDIKKATRNF SRDNIIGSGG
301: YGNVYKGMLL DGSQVAFKRF KNCSVAGDAS FTHEVEVIAS VRHVNLVTLR GYCTATTNLE GHQRIIVTDL MENGSLYDHL FGSAKKNLSW PIRQKIALGT
401: ARGLAYLHYG AQPSIIHRDI KASNILLDHH FEAKVADFGL AKFNPEGMTH MSTRVAGTMG YVAPEYALYG QLTDRSDVFS FGVVLLELLS GRKALQTDND
501: GQPAALTDFA WSLVRNGSAL DVVEDGVPEP GPPEVLEKYV LVAVLCSHPQ LYARPTMDQV VKMLETDESV PSLMERPIPF IAGRLDIEKS ALSNSGHLCS
601: PTGYQAYTLQ ARRKSNSKEE EEEEEGSSVA ETVTTD

Best Arabidopsis Sequence Match ( AT2G48010.1 )
(BLAST)

001: MLFLRRIAVV FFVFTSFSAA QNSTCPLDFS VLEPFRRPKP DGATTCQYLL QGLRLLYSHH LRQTGSFLPP PESAASCWAA LQSSVAGFLP RFDVRSTCGF
101: QTPWISQGCM DITTRSQFES LIPNSSLATT AMRCNTSLES NTPCASCTQS LSAFQPYLSG PSLGNVSDCA SFPSIYAAAF ANSLGPTDKG TAKCLFQLDL
201: ASPTSSGANK VKVLVSSFSV LLVASVLVIT AWFWYCRRKK SKLLKPRDTS LEAGTQSRLD SMSESTTLVK FSFDEIKKAT NNFSRHNIIG RGGYGNVFKG
301: ALPDGTQVAF KRFKNCSAGG DANFAHEVEV IASIRHVNLL ALRGYCTATT PYEGHQRIIV CDLVSNGSLH DHLFGDLEAQ LAWPLRQRIA LGMARGLAYL
401: HYGAQPSIIH RDIKASNILL DERFEAKVAD FGLAKFNPEG MTHMSTRVAG TMGYVAPEYA LYGQLTEKSD VYSFGVVLLE LLSRRKAIVT DEEGQPVSVA
501: DWAWSLVREG QTLDVVEDGM PEKGPPEVLE KYVLIAVLCS HPQLHARPTM DQVVKMLESN EFTVIAIPQR PIPLVACREE IDRSVSSSSG SGKLTSPTGY
601: QAFSFGGDGP SGNTNTT

Arabidopsis Description

RKF3Probable LRR receptor-like serine/threonine-protein kinase RKF3 [Source:UniProtKB/Swiss-Prot;Acc:P93050]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.