Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g005240.1.1 | Tomato | cytosol | 96.08 | 96.08 |
| VIT_05s0020g04420.t01 | Wine grape | cytosol | 76.47 | 78.52 |
| KRG92449 | Soybean | cytosol | 75.16 | 76.67 |
| KRH69070 | Soybean | cytosol | 74.51 | 76.0 |
| KRH34350 | Soybean | cytosol | 74.51 | 76.0 |
| KRH31638 | Soybean | cytosol | 73.2 | 74.67 |
| PGSC0003DMT400042062 | Potato | cytosol | 72.55 | 74.0 |
| PGSC0003DMT400046278 | Potato | cytosol | 36.6 | 72.73 |
| AT4G14640.1 | Thale cress | cytosol | 69.28 | 70.2 |
| PGSC0003DMT400083971 | Potato | extracellular | 67.97 | 69.8 |
| GSMUA_Achr2P12680_001 | Banana | cytosol | 67.32 | 69.59 |
| PGSC0003DMT400058435 | Potato | cytosol | 67.32 | 69.13 |
| PGSC0003DMT400054299 | Potato | cytosol | 50.98 | 69.03 |
| GSMUA_Achr4P22570_001 | Banana | cytosol | 66.67 | 68.92 |
| PGSC0003DMT400070437 | Potato | cytosol | 66.67 | 68.46 |
| PGSC0003DMT400018569 | Potato | cytosol | 66.67 | 68.46 |
| GSMUA_Achr7P01390_001 | Banana | cytosol | 66.01 | 68.24 |
| GSMUA_Achr1P04700_001 | Banana | cytosol | 65.36 | 67.57 |
| CDY06478 | Canola | cytosol | 66.67 | 67.55 |
| GSMUA_Achr1P27230_001 | Banana | cytosol | 64.71 | 66.89 |
| Bra039723.1-P | Field mustard | cytosol | 66.67 | 66.67 |
| CDY34215 | Canola | cytosol | 67.32 | 66.03 |
| Bra023786.1-P | Field mustard | cytosol | 67.32 | 66.03 |
| Bra033898.1-P | Field mustard | cytosol | 66.67 | 65.81 |
| CDY10686 | Canola | cytosol | 66.01 | 65.16 |
| CDX92965 | Canola | cytosol | 65.36 | 64.94 |
| Bra001892.1-P | Field mustard | cytosol | 65.36 | 64.94 |
| GSMUA_Achr5P09010_001 | Banana | cytosol | 62.75 | 64.86 |
| GSMUA_Achr6P24410_001 | Banana | cytosol | 62.75 | 64.43 |
| PGSC0003DMT400014123 | Potato | mitochondrion | 49.02 | 61.48 |
| CDX94883 | Canola | cytosol | 44.44 | 61.26 |
| PGSC0003DMT400083727 | Potato | cytosol | 58.82 | 61.22 |
| CDY10325 | Canola | cytosol | 45.1 | 61.06 |
| Os03t0743500-02 | Rice | nucleus | 60.13 | 59.74 |
| AT3G22930.1 | Thale cress | cytosol | 66.67 | 58.96 |
| KXG37587 | Sorghum | cytosol | 58.82 | 58.44 |
| CDY40824 | Canola | cytosol | 67.32 | 57.22 |
| PGSC0003DMT400097662 | Potato | cytosol, mitochondrion | 58.82 | 52.02 |
| Zm00001d033980_P001 | Maize | cytosol | 49.67 | 48.41 |
| TraesCS5A01G382800.2 | Wheat | plastid | 54.9 | 44.92 |
| GSMUA_Achr3P25390_001 | Banana | cytosol | 50.33 | 42.08 |
| GSMUA_Achr1P14070_001 | Banana | cytosol | 58.17 | 39.38 |
| PGSC0003DMT400038352 | Potato | cytosol | 39.22 | 36.81 |
| PGSC0003DMT400070433 | Potato | cytosol | 35.29 | 36.73 |
| PGSC0003DMT400008152 | Potato | cytosol | 38.56 | 36.2 |
| PGSC0003DMT400010295 | Potato | cytosol, mitochondrion | 38.56 | 35.12 |
| PGSC0003DMT400041342 | Potato | cytosol, mitochondrion | 35.29 | 33.54 |
| PGSC0003DMT400063261 | Potato | cytosol | 33.33 | 31.68 |
| PGSC0003DMT400019291 | Potato | cytosol | 21.57 | 28.45 |
| KXG37588 | Sorghum | mitochondrion, nucleus | 1.31 | 1.46 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400034833 | EnsemblPlantsGene:PGSC0003DMG400013390 | EntrezGene:102587410 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23050 |
| PANTHER:PTHR23050:SF336 | PFAM:PF13499 | PFscan:PS50222 | PGSC:PGSC0003DMG400013390 | RefSeq:XP_006356103.1 | ScanProsite:PS00018 |
| SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI0002968046 | UniProt:M1B1C6 | MapMan:35.1 | : |
Description
Calmodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400013390]
Coordinates
chr3:+:316869..319526
Molecular Weight (calculated)
17740.0 Da
IEP (calculated)
4.101
GRAVY (calculated)
-0.490
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKIVKEEN QLVQFKEAIN LFDKDVHGCI TIEELATVIR SLDENPTEEE LCHMISEVDA DHHDNGTMEF NEFLNLITKK MKETDLEEEL KEVFKVFDKD
101: QNGFISATDL RHVMINLGEK LTEEEAEQMI READLDGDGQ VNFDEFVKMM IKL
101: QNGFISATDL RHVMINLGEK LTEEEAEQMI READLDGDGQ VNFDEFVKMM IKL
001: MADQLTDEQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMAKKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVEEMIREAD VDGDGQINYE EFVKIMMAK
101: ISAAELRHVM TNLGEKLTDE EVEEMIREAD VDGDGQINYE EFVKIMMAK
Arabidopsis Description
CAM4Calmodulin 4 [Source:UniProtKB/TrEMBL;Acc:F4IEU4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.