Factsheet for PGSC0003DMT400069840

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10
cytosol 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117
mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400034833
PGSC0003DMT400042062

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17240.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT3G17240.1	PGSC0003DMT400042062	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053300.2.1	Tomato	extracellular, mitochondrion, nucleus, plastid, unclear	99.4	99.4
PGSC0003DMT400011741	Potato	mitochondrion	91.8	91.07
VIT_05s0020g00380.t01	Wine grape	mitochondrion	87.6	87.25
KRH02419	Soybean	mitochondrion	85.4	85.4
KRH50629	Soybean	mitochondrion	85.0	85.0
GSMUA_Achr2P02040_001	Banana	mitochondrion	79.4	84.83
CDX95864	Canola	mitochondrion	85.6	84.58
Bra022204.1-P	Field mustard	mitochondrion	85.2	84.52
CDX92121	Canola	mitochondrion	85.2	84.52
GSMUA_Achr11P...	Banana	mitochondrion	79.0	84.4
AT1G48030.3	Thale cress	mitochondrion	85.2	84.02
CDX93639	Canola	mitochondrion	85.0	83.83
CDY20935	Canola	mitochondrion	84.8	83.63
Bra018700.1-P	Field mustard	mitochondrion	84.8	83.63
AT3G17240.1	Thale cress	mitochondrion	84.8	83.63
TraesCS1A01G105600.1	Wheat	mitochondrion	83.4	83.07
TraesCS1D01G109600.1	Wheat	mitochondrion	83.2	82.87
TraesCS1B01G131300.1	Wheat	mitochondrion	83.2	82.87
Zm00001d009163_P001	Maize	mitochondrion	81.8	81.96
Zm00001d040721_P002	Maize	mitochondrion	82.2	81.71
Os01t0328700-01	Rice	mitochondrion	82.0	81.51
EES02889	Sorghum	mitochondrion	82.0	81.35
TraesCS1A01G066400.1	Wheat	mitochondrion	80.6	80.12
TraesCS1B01G084700.1	Wheat	mitochondrion	80.6	80.12
TraesCS1D01G067500.1	Wheat	mitochondrion	80.8	80.0
EES17766	Sorghum	mitochondrion	79.4	79.4
HORVU1Hr1G013740.1	Barley	cytosol, mitochondrion	79.4	78.3
HORVU1Hr1G023630.1	Barley	cytosol, mitochondrion, plastid	82.6	75.78
PGSC0003DMT400069988	Potato	cytosol	11.6	34.32
PGSC0003DMT400007182	Potato	extracellular	35.4	31.05
PGSC0003DMT400069799	Potato	mitochondrion, plastid	35.2	30.88
PGSC0003DMT400076297	Potato	cytosol	21.6	28.12
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	26.6	23.92

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
MapMan:1.3.4.3	EntrezGene:102605442	MapMan:2.2.1.3	MapMan:2.3.4.3	Gene3D:3.30.390.30	Gene3D:3.50.50.60
MapMan:4.2.7.2.3	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004148	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114	InterPro:IPR016156
InterPro:IPR036188	InterPro:Lipoamide_DH	UniProt:M1CL86	PFAM:PF02852	PFAM:PF07992	EnsemblPlantsGene:PGSC0003DMG400027156
PGSC:PGSC0003DMG400027156	EnsemblPlants:PGSC0003DMT400069840	PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076
PANTHER:PTHR22912	PANTHER:PTHR22912:SF151	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905
SUPFAM:SSF55424	TIGRFAMs:TIGR01350	UniParc:UPI000295F7A2	RefSeq:XP_006355723.1	SEG:seg	:

Description

Dihydrolipoyl dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400027156]

Coordinates

chr5:+:48576471..48581269

Molecular Weight (calculated)

52861.9 Da

IEP (calculated)

7.384

GRAVY (calculated)

0.029

Length

500 amino acids

Sequence
(BLAST)

001: MAIGSLARRK ASTILSSRYL KYSFSLSRGY ASGSDENDVV VIGGGPGGYV AAIKAAQLGL KTTCIEKRGT LGGTCLNVGC IPSKALLHSS HMYHEAQHSF
101: ASHGVKFSSV EVDLPAMMAQ KDKAVAGLTR GIEGLFKKNK VNYVKGYGKF LSPSEVSVDT VEGGNTIVKG KNIIIATGSD VKSLPGLTID EKRIVSSTGA
201: LALTEIPKKL VVIGAGYIGL EMGSVWARLG SEVTVVEFAS DIVPTMDGEV RKQFQRSLEK QKMKFMLKTK VVSVDTVGDS VKLTLEPAAG GEQTTLEADV
301: VLVSAGRVPF TSGLGLDKIG VETDKAGRIL VNERFASNVP GVYAIGDVIP GPMLAHKAEE DGVACVEFIA GKEGHVDYDL VPGVCYTHPE VASVGKTEEQ
401: VKALGVDYRV GKFPFLANSR AKAIDDAEGI VKVIAEKGTD KILGVHIMSS NAGELIHEAV LAMNYGASSE DIARTCHAHP TMSEALKEAA MATYDKPIHM

Best Arabidopsis Sequence Match ( AT1G48030.4 )
(BLAST)

001: MAMASLARRK AYFLTRNLSN SPTDALRFSF SLSRGFASSG SDENDVVIIG GGPGGYVAAI KASQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHSFANH GIKVSSVEVD LPAMLAQKDN AVKNLTRGIE GLFKKNKVTY VKGYGKFISP NEVSVETIDG GNTIVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL SEVPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAGDIV PSMDGEIRKQ FQRSLEKQKM KFMLKTKVVS VDSSSDGVKL TVEPAEGGEQ
301: SILEADVVLV SAGRTPFTSG LDLEKIGVET DKAGRILVND RFLSNVPGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTHPEVAS
401: VGKTEEQLKK EGVSYRVGKF PFMANSRAKA IDNAEGLVKI LADKETDKIL GVHIMAPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EALKEAAMAT
501: YDKPIHI

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M5K3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.