Factsheet for GSMUA_Achr2P02040_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P22570_001
GSMUA_Achr5P09010_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17240.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT3G17240.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT3G17240.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT3G17240.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT3G17240.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT3G17240.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT3G17240.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT3G17240.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT3G17240.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	95.09	95.09
Solyc05g053300.2.1	Tomato	extracellular, mitochondrion, nucleus, plastid, unclear	85.47	80.0
VIT_05s0020g00380.t01	Wine grape	mitochondrion	85.68	79.88
PGSC0003DMT400069840	Potato	mitochondrion	84.83	79.4
KRH02419	Soybean	mitochondrion	84.83	79.4
KRH50629	Soybean	mitochondrion	84.4	79.0
PGSC0003DMT400011741	Potato	mitochondrion	85.04	78.97
Solyc12g099100.1.1	Tomato	plastid	84.62	78.57
TraesCS1A01G105600.1	Wheat	mitochondrion	84.19	78.49
TraesCS1D01G109600.1	Wheat	mitochondrion	83.97	78.29
TraesCS1B01G131300.1	Wheat	mitochondrion	83.97	78.29
Zm00001d009163_P001	Maize	mitochondrion	83.33	78.16
Bra022204.1-P	Field mustard	mitochondrion	83.76	77.78
CDX92121	Canola	mitochondrion	83.76	77.78
Os01t0328700-01	Rice	mitochondrion	83.12	77.34
Zm00001d040721_P002	Maize	mitochondrion	83.12	77.34
CDX95864	Canola	mitochondrion	83.55	77.27
TraesCS1B01G084700.1	Wheat	mitochondrion	82.91	77.14
TraesCS1A01G066400.1	Wheat	mitochondrion	82.91	77.14
CDX93639	Canola	mitochondrion	83.55	77.12
EES02889	Sorghum	mitochondrion	82.91	76.98
CDY20935	Canola	mitochondrion	83.33	76.92
Bra018700.1-P	Field mustard	mitochondrion	83.33	76.92
TraesCS1D01G067500.1	Wheat	mitochondrion	82.91	76.83
AT1G48030.3	Thale cress	mitochondrion	82.91	76.53
EES17766	Sorghum	mitochondrion	81.62	76.4
AT3G17240.1	Thale cress	mitochondrion	82.48	76.13
HORVU1Hr1G013740.1	Barley	cytosol, mitochondrion	81.2	74.95
HORVU1Hr1G023630.1	Barley	cytosol, mitochondrion, plastid	83.76	71.93
GSMUA_Achr3P12660_001	Banana	plastid	37.61	31.04
GSMUA_Achr1P18490_001	Banana	plastid	17.09	28.17
GSMUA_AchrUn_...	Banana	cytosol	20.94	27.3
GSMUA_Achr1P10930_001	Banana	cytosol	27.99	26.84
GSMUA_AchrUn_...	Banana	cytosol	5.13	25.81
GSMUA_Achr9P21540_001	Banana	cytosol	7.91	23.12
GSMUA_Achr3P29340_001	Banana	plastid	27.14	22.72

Protein Annotations

MapMan:1.3.4.3	MapMan:2.2.1.3	MapMan:2.3.4.3	Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:4.2.7.2.3
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0022900
GO:GO:0045454	GO:GO:0050660	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr2G02040_001	EnsemblPlants:GSMUA_Achr2P02040_001	EnsemblPlants:GSMUA_Achr2T02040_001
InterPro:IPR016156	InterPro:IPR036188	UniProt:M0S4E5	PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350
PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF151	InterPro:Pyr_OxRdtase_I_AS
InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	UniParc:UPI0002967783	SEG:seg

Description

Dihydrolipoyl dehydrogenase, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr2G02040_001]

Coordinates

chr2:-:7872609..7877493

Molecular Weight (calculated)

49654.5 Da

IEP (calculated)

7.436

GRAVY (calculated)

0.035

Length

468 amino acids

Sequence
(BLAST)

001: MMSLARRRAG GLLRPETMRH AAVFCRGFAA AADENDVVVI GGGPGGYVAA IKAAQMGLKT TCIEKRGTLG GTCLNVGCIP SKALLHSSHM YHEAKHAFPS
101: HGVKFSQLEI DLPAMMAQKD KAVSGLTRGI EGLFKKNKVN YVKGFGKFVS PSEVSVDTDE GGNTVVKAKN IIIATGSDVK SLPGITIDEK KIVSSTGALS
201: LSEVPKKLVV IGAGYIGLEM GSVWGRLGSE VTVVEFAPDI VPSMDGEVRK QFQRMLEKQK MNTLEADVVL VSAGRIPYTA GLGLDTIGVQ TDKAGRIPVD
301: KHFMTNVSGV YAIGDVIPGP MLAHKAEEDG VACVEFIAGK VGHVDYDMVP GVVYTHPEVA SVGKTEEQVK ALGVAYRVGK FPFMANSRAK AIDDAEGLVK
401: ILAEKETDKI LGVHIMAPNA GELIHEAVLA LQYGASSEDI ARTCHAHPTM SEAVKEAAMA TYDKPIHM

Best Arabidopsis Sequence Match ( AT1G48030.4 )
(BLAST)

001: MAMASLARRK AYFLTRNLSN SPTDALRFSF SLSRGFASSG SDENDVVIIG GGPGGYVAAI KASQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHSFANH GIKVSSVEVD LPAMLAQKDN AVKNLTRGIE GLFKKNKVTY VKGYGKFISP NEVSVETIDG GNTIVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL SEVPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAGDIV PSMDGEIRKQ FQRSLEKQKM KFMLKTKVVS VDSSSDGVKL TVEPAEGGEQ
301: SILEADVVLV SAGRTPFTSG LDLEKIGVET DKAGRILVND RFLSNVPGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTHPEVAS
401: VGKTEEQLKK EGVSYRVGKF PFMANSRAKA IDNAEGLVKI LADKETDKIL GVHIMAPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EALKEAAMAT
501: YDKPIHI

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M5K3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.