Factsheet for VIT_05s0020g00380.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17240.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053300.2.1	Tomato	extracellular, mitochondrion, nucleus, plastid, unclear	87.45	87.8
PGSC0003DMT400069840	Potato	mitochondrion	87.25	87.6
PGSC0003DMT400011741	Potato	mitochondrion	86.06	85.71
GSMUA_Achr2P02040_001	Banana	mitochondrion	79.88	85.68
KRH02419	Soybean	mitochondrion	85.26	85.6
KRH50629	Soybean	mitochondrion	85.26	85.6
Solyc12g099100.1.1	Tomato	plastid	85.86	85.52
GSMUA_Achr11P...	Banana	mitochondrion	79.48	85.26
Bra022204.1-P	Field mustard	mitochondrion	84.86	84.52
CDX92121	Canola	mitochondrion	84.66	84.33
CDX93639	Canola	mitochondrion	85.06	84.22
CDX95864	Canola	mitochondrion	84.86	84.19
Bra018700.1-P	Field mustard	mitochondrion	84.86	84.02
CDY20935	Canola	mitochondrion	84.46	83.63
AT1G48030.3	Thale cress	mitochondrion	84.26	83.43
AT3G17240.1	Thale cress	mitochondrion	84.06	83.23
Zm00001d009163_P001	Maize	mitochondrion	80.88	81.36
TraesCS1A01G105600.1	Wheat	mitochondrion	81.08	81.08
Zm00001d040721_P002	Maize	mitochondrion	81.08	80.91
Os01t0328700-01	Rice	mitochondrion	81.08	80.91
TraesCS1D01G109600.1	Wheat	mitochondrion	80.88	80.88
TraesCS1B01G131300.1	Wheat	mitochondrion	80.88	80.88
EES02889	Sorghum	mitochondrion	80.88	80.56
TraesCS1A01G066400.1	Wheat	mitochondrion	80.28	80.12
TraesCS1B01G084700.1	Wheat	mitochondrion	80.28	80.12
TraesCS1D01G067500.1	Wheat	mitochondrion	80.48	80.0
EES17766	Sorghum	mitochondrion	79.08	79.4
HORVU1Hr1G013740.1	Barley	cytosol, mitochondrion	79.08	78.3
HORVU1Hr1G023630.1	Barley	cytosol, mitochondrion, plastid	80.48	74.13
VIT_05s0077g01210.t01	Wine grape	plastid	35.26	31.0
VIT_14s0060g01330.t01	Wine grape	plastid	34.46	29.42
VIT_05s0051g00870.t01	Wine grape	cytosol	27.49	27.82
VIT_14s0060g01410.t01	Wine grape	cytosol	12.95	26.86
VIT_07s0141g00390.t01	Wine grape	plastid	25.7	23.08

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
MapMan:1.3.4.3	EntrezGene:100246037	wikigene:100246037	MapMan:2.2.1.3	MapMan:2.3.4.3	Gene3D:3.30.390.30
Gene3D:3.50.50.60	MapMan:4.2.7.2.3	EMBL:AM455832	ProteinID:CAN67811	ProteinID:CAN67811.1	ProteinID:CCB50269
ProteinID:CCB50269.1	UniProt:F6HE11	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	EMBL:FN595749
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004148	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660
GO:GO:0055114	InterPro:IPR016156	InterPro:IPR036188	EntrezGene:LOC100246037	wikigene:LOC100246037	InterPro:Lipoamide_DH
PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076
PANTHER:PTHR22912	PANTHER:PTHR22912:SF151	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905
SUPFAM:SSF55424	TIGR:TC67304	TIGRFAMs:TIGR01350	UniParc:UPI00015C7506	ArrayExpress:VIT_05s0020g00380	EnsemblPlantsGene:VIT_05s0020g00380
EnsemblPlants:VIT_05s0020g00380.t01	unigene:Vvi.8079	RefSeq:XP_002263180	RefSeq:XP_002263180.1	SEG:seg	:

Description

Dihydrolipoyl dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6HE11]

Coordinates

chr5:-:2195376..2199406

Molecular Weight (calculated)

52923.2 Da

IEP (calculated)

7.194

GRAVY (calculated)

0.073

Length

502 amino acids

Sequence
(BLAST)

001: MAMALARRSK NLYSCGVLRY SLSLTSFSRG FASAGSDEND VVVIGGGPGG YVAAIKAAQL GLKTTCIEKR GTLGGTCLNV GCIPSKALLH SSHMYHEAKH
101: SFASHGVKFP SVEVDLPAMM GQKDKAVANL TRGIEGLFKK NKVNYVKGYG KFISPSEVSV DTIEGGNAVV KGKNIIIATG SDVKSLPGIT IDEKRIVSST
201: GALALSEIPK KLVVVGAGYI GLEMGSVWAR LGSEVTVVEF APDIVPTMDG EIRKQFQRAL EKQKMKFMVK TKVAGVDTSG DLVKLTLEPA AGGEQSTLEA
301: DVVLVSAGRS PFTAGLGLDK IGVETDKIGR ILVNEKFSTN VSGVYAIGDV IPGPMLAHKA EEDGVACVEM IAGKAAHVDY DMVPGVVYTH PEVASVGKTE
401: EQVKALGVEY CVGKFPLLAN SRAKAIDDAE GLVKILAEKE TDKILGVHIF GPNAGELIHE AVLALHYGAS SEDIARTCHA HPTMSEALKE AAMATYDKPI
501: HI

Best Arabidopsis Sequence Match ( AT1G48030.4 )
(BLAST)

001: MAMASLARRK AYFLTRNLSN SPTDALRFSF SLSRGFASSG SDENDVVIIG GGPGGYVAAI KASQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHSFANH GIKVSSVEVD LPAMLAQKDN AVKNLTRGIE GLFKKNKVTY VKGYGKFISP NEVSVETIDG GNTIVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL SEVPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAGDIV PSMDGEIRKQ FQRSLEKQKM KFMLKTKVVS VDSSSDGVKL TVEPAEGGEQ
301: SILEADVVLV SAGRTPFTSG LDLEKIGVET DKAGRILVND RFLSNVPGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTHPEVAS
401: VGKTEEQLKK EGVSYRVGKF PFMANSRAKA IDNAEGLVKI LADKETDKIL GVHIMAPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EALKEAAMAT
501: YDKPIHI

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M5K3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.