Factsheet for Solyc12g099100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 10
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g005240.1.1
Solyc06g053930.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17240.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT3G17240.1	Solyc06g053930.2.1	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011741	Potato	mitochondrion	99.21	99.21
Solyc05g053300.2.1	Tomato	extracellular, mitochondrion, nucleus, plastid, unclear	91.27	92.0
VIT_05s0020g00380.t01	Wine grape	mitochondrion	85.52	85.86
KRH50629	Soybean	mitochondrion	84.52	85.2
KRH02419	Soybean	mitochondrion	84.52	85.2
GSMUA_Achr2P02040_001	Banana	mitochondrion	78.57	84.62
GSMUA_Achr11P...	Banana	mitochondrion	78.37	84.4
Bra022204.1-P	Field mustard	mitochondrion	83.93	83.93
CDX92121	Canola	mitochondrion	83.73	83.73
CDY20935	Canola	mitochondrion	84.13	83.63
CDX95864	Canola	mitochondrion	83.93	83.6
CDX93639	Canola	mitochondrion	83.53	83.04
AT3G17240.1	Thale cress	mitochondrion	83.53	83.04
Bra018700.1-P	Field mustard	mitochondrion	83.33	82.84
AT1G48030.3	Thale cress	mitochondrion	82.74	82.25
TraesCS1A01G105600.1	Wheat	mitochondrion	80.56	80.88
TraesCS1D01G109600.1	Wheat	mitochondrion	80.36	80.68
TraesCS1B01G131300.1	Wheat	mitochondrion	80.36	80.68
Zm00001d009163_P001	Maize	mitochondrion	79.76	80.56
EES02889	Sorghum	mitochondrion	80.16	80.16
Zm00001d040721_P002	Maize	mitochondrion	79.76	79.92
Os01t0328700-01	Rice	mitochondrion	79.37	79.52
TraesCS1A01G066400.1	Wheat	mitochondrion	78.37	78.53
TraesCS1B01G084700.1	Wheat	mitochondrion	78.17	78.33
TraesCS1D01G067500.1	Wheat	mitochondrion	78.17	78.02
EES17766	Sorghum	mitochondrion	76.98	77.6
HORVU1Hr1G013740.1	Barley	cytosol, mitochondrion	76.39	75.94
HORVU1Hr1G023630.1	Barley	cytosol, mitochondrion, plastid	79.76	73.76
Solyc01g100360.2.1	Tomato	plastid	34.52	30.53
Solyc05g053100.2.1	Tomato	nucleus	34.33	30.3
Solyc09g091840.2.1	Tomato	extracellular	24.4	27.09
Solyc09g065900.2.1	Tomato	plastid	25.6	23.16

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
MapMan:1.3.4.3	MapMan:2.2.1.3	MapMan:2.3.4.3	Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:4.2.7.2.3
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004148	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114	InterPro:IPR016156	InterPro:IPR036188
UniProt:K4DHT1	InterPro:Lipoamide_DH	PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350	PRINTS:PR00368
PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF151	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase
InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	EnsemblPlantsGene:Solyc12g099100.1	EnsemblPlants:Solyc12g099100.1.1	TIGRFAMs:TIGR01350
UniParc:UPI000276A534	SEG:seg	:	:	:	:

Description

Dihydrolipoyl dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4DHT1]

Coordinates

chr12:+:66370130..66375131

Molecular Weight (calculated)

53413.4 Da

IEP (calculated)

6.755

GRAVY (calculated)

0.020

Length

504 amino acids

Sequence
(BLAST)

001: MAISTLARRK ATTFLSSRFL YSTSKYSFSL TRGFASGSDE NDVVVIGGGP GGYVAAIKAA QLGLKTTCIE KRGTLGGTCL NVGCIPSKAL LHSSHMFHEA
101: QHSFANHGVK FSSVEVDLPA MMGQKDKAVS NLTRGIEGLF KKNKVNYVKG YGKFLSPSEI SVDTVEGGNS VVKGKNIIIA TGSDVKGLPG ITIDEKKIVS
201: STGALALTEI PQRLVVIGAG YIGLEMGSVW GRLGSEVTVV EFAADIVPTM DGEVRKQFQR ALEKQKMKFM LNTKVVSVDA TGDGVKLTLE PSGGGDQTIL
301: EADVVLVSAG RVPFTSGLGL DTIGVETDKA GRILVNERFA TNVPGVHAIG DVIPGPMLAH KAEEDGVACV EFIAGKEGHV DYDMVPGVVY THPEVAYVGK
401: TEEQVKSLGV DYRVGKFPFL ANSRAKAIDD AEGIVKVIAE KESDKILGVH IMSPNAGELI HEAVLALQYG ASSEDIARTC HAHPTMSEAL KEAAMATYDK
501: PIHM

Best Arabidopsis Sequence Match ( AT1G48030.4 )
(BLAST)

001: MAMASLARRK AYFLTRNLSN SPTDALRFSF SLSRGFASSG SDENDVVIIG GGPGGYVAAI KASQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHSFANH GIKVSSVEVD LPAMLAQKDN AVKNLTRGIE GLFKKNKVTY VKGYGKFISP NEVSVETIDG GNTIVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL SEVPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAGDIV PSMDGEIRKQ FQRSLEKQKM KFMLKTKVVS VDSSSDGVKL TVEPAEGGEQ
301: SILEADVVLV SAGRTPFTSG LDLEKIGVET DKAGRILVND RFLSNVPGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTHPEVAS
401: VGKTEEQLKK EGVSYRVGKF PFMANSRAKA IDNAEGLVKI LADKETDKIL GVHIMAPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EALKEAAMAT
501: YDKPIHI

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M5K3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.