CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY06478

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17240.1	CDY06478	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92121	Canola	mitochondrion	98.42	98.81
AT3G17240.1	Thale cress	mitochondrion	95.26	95.07
CDX93639	Canola	mitochondrion	93.48	93.29
CDY20935	Canola	mitochondrion	92.49	92.31
KRH50629	Soybean	mitochondrion	85.57	86.6
KRH02419	Soybean	mitochondrion	85.38	86.4
Solyc05g053300.2.1	Tomato	extracellular, mitochondrion, nucleus, plastid, unclear	84.98	86.0
PGSC0003DMT400069840	Potato	mitochondrion	84.58	85.6
VIT_05s0020g00380.t01	Wine grape	mitochondrion	84.19	84.86
PGSC0003DMT400011741	Potato	mitochondrion	83.79	84.13
Solyc12g099100.1.1	Tomato	plastid	83.6	83.93
GSMUA_Achr2P02040_001	Banana	mitochondrion	77.27	83.55
GSMUA_Achr11P...	Banana	mitochondrion	76.09	82.27
TraesCS1A01G105600.1	Wheat	mitochondrion	79.64	80.28
TraesCS1B01G131300.1	Wheat	mitochondrion	79.45	80.08
TraesCS1D01G109600.1	Wheat	mitochondrion	79.45	80.08
Zm00001d009163_P001	Maize	mitochondrion	77.08	78.16
Os01t0328700-01	Rice	mitochondrion	77.47	77.93
Zm00001d040721_P002	Maize	mitochondrion	77.27	77.73
EES02889	Sorghum	mitochondrion	77.27	77.58
TraesCS1B01G084700.1	Wheat	mitochondrion	77.08	77.53
TraesCS1A01G066400.1	Wheat	mitochondrion	76.88	77.34
TraesCS1D01G067500.1	Wheat	mitochondrion	77.08	77.23
EES17766	Sorghum	mitochondrion	75.89	76.8
HORVU1Hr1G013740.1	Barley	cytosol, mitochondrion	75.3	75.15
HORVU1Hr1G023630.1	Barley	cytosol, mitochondrion, plastid	78.85	73.21
CDY32221	Canola	plastid	33.99	31.33
CDY34436	Canola	plastid	33.6	31.02
CDX90541	Canola	extracellular, nucleus, peroxisome	12.65	30.77
CDX75895	Canola	plastid	33.99	27.88
CDX82387	Canola	plastid	33.99	27.83
CDX77463	Canola	cytosol	26.09	27.16
CDX92998	Canola	cytosol	25.89	27.07
CDX85155	Canola	cytosol	25.89	27.07
CDX94838	Canola	cytosol	26.68	25.52
CDX94793	Canola	endoplasmic reticulum	8.3	25.15
CDX73461	Canola	plastid	25.89	23.35
CDY69892	Canola	plastid	25.89	23.31
CDY09711	Canola	plasma membrane	17.19	22.96
CDY13217	Canola	plastid	25.49	21.43
CDX76141	Canola	plastid	24.9	20.83
CDX93023	Canola	cytosol, mitochondrion	2.77	20.59

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
MapMan:1.3.4.3	MapMan:2.2.1.3	MapMan:2.3.4.3	Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:4.2.7.2.3
GO:A0A078E5J4	EnsemblPlants:CDX95864	ProteinID:CDX95864	ProteinID:CDX95864.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004148	GO:GO:0005488
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00101825001	InterPro:IPR016156	InterPro:IPR036188	InterPro:Lipoamide_DH	PFAM:PF02852	PFAM:PF07992
PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF151
MetaCyc:PWY-5046	MetaCyc:PWY-5084	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905
SUPFAM:SSF55424	TIGRFAMs:TIGR01350	UniParc:UPI0004EC5F56	SEG:seg	:	:

Description

BnaC05g36150D

Coordinates

chrLK031891:+:790266..792914

Molecular Weight (calculated)

53835.1 Da

IEP (calculated)

7.428

GRAVY (calculated)

-0.022

Length

506 amino acids

Sequence
(BLAST)

001: MAMAMANLAR RKAYLLTRNI STAPLRSSFS LSRGFASSGS DENDVVIIGG GPGGYVAAIK AAQLGLKTTC IEKRGALGGT CLNVGCIPSK ALLHSSHMYH
101: EAKHVFANHG VKVSSVEVDL PAMLAQKDTA VKNLTRGIEG LFKKNKVNYV KGYGKFLSPS EVSVETTDGE TTVVKGKHII VATGSDVKSL PGITIDEKKI
201: VSSTGALSLT EIPKKLIVIG AGYIGLEMGS VWGRLGSEVT VVEFASDIVP SMDGEIRKQF QRSLEKQKMK FMLKTKVVGV DSSGDGVKLI VEPAEGGDQT
301: TLEADVVLVS AGRSPFTSGL DLDKIGVETD KIGRILVNER FSTNVSGVYA IGDVIPGPML AHKAEEDGVA CVEFIAGKHG HVDYDKVPGV VYTYPEVASV
401: GKTEEQLKKD GVSYRVGKFP FMANSRAKAI DTAEGLVKIL ADKETDKILG VHIMSPNAGE LIHEAVLAIN YDASSEDIAR VCHAHPTMSE AIKEAAMATY
501: DKPIHM

Best Arabidopsis Sequence Match ( AT3G17240.1 )
(BLAST)

001: MAMASLARRK AYFLTRNISN SPTDAFRFSF SLTRGFASSG SDDNDVVIIG GGPGGYVAAI KAAQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHVFANH GVKVSSVEVD LPAMLAQKDT AVKNLTRGVE GLFKKNKVNY VKGYGKFLSP SEVSVDTIDG ENVVVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL TEIPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAADIV PAMDGEIRKQ FQRSLEKQKM KFMLKTKVVG VDSSGDGVKL IVEPAEGGEQ
301: TTLEADVVLV SAGRTPFTSG LDLEKIGVET DKGGRILVNE RFSTNVSGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTYPEVAS
401: VGKTEEQLKK EGVSYNVGKF PFMANSRAKA IDTAEGMVKI LADKETDKIL GVHIMSPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EAIKEAAMAT
501: YDKPIHM

Arabidopsis Description

LPD2Dihydrolipoyl dehydrogenase 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M5K2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.