CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21581

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54660.1	CDY21581	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73461	Canola	plastid	77.84	23.17
CDY69892	Canola	plastid	77.25	22.95
AT3G54660.1	Thale cress	plastid	76.05	22.48
CDY13217	Canola	plastid	76.65	21.26
CDX76141	Canola	plastid	76.05	20.99
KRH71329	Soybean	plastid	67.66	20.73
VIT_07s0141g00390.t01	Wine grape	plastid	68.86	20.57
KRH32102	Soybean	plastid	66.47	20.37
TraesCS4B01G278900.1	Wheat	plastid	66.47	20.18
Os03t0163300-01	Rice	plastid	67.07	20.18
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	67.07	20.14
TraesCS4D01G277400.1	Wheat	golgi	66.47	20.11
Solyc09g065900.2.1	Tomato	plastid	67.07	20.11
TraesCS4A01G025200.1	Wheat	golgi	65.87	20.0
GSMUA_Achr3P29340_001	Banana	plastid	65.87	19.68
OQU91783	Sorghum	plastid	61.68	19.4
EER95455	Sorghum	plastid	62.87	19.09
Zm00001d027769_P001	Maize	plastid	62.87	19.09
HORVU4Hr1G073930.1	Barley	mitochondrion, plastid	64.67	18.31
Os10t0415300-02	Rice	plastid	57.48	17.33
CDX90541	Canola	extracellular, nucleus, peroxisome	21.56	17.31
CDX85155	Canola	cytosol	42.52	14.67
CDX92998	Canola	cytosol	42.52	14.67
CDX77463	Canola	cytosol	42.52	14.61
CDX94838	Canola	cytosol	42.52	13.42
CDY34436	Canola	plastid	29.94	9.12
CDY32221	Canola	plastid	29.94	9.11
CDX93639	Canola	mitochondrion	25.75	8.48
CDY20935	Canola	mitochondrion	25.75	8.48
CDX75895	Canola	plastid	31.14	8.43
CDX82387	Canola	plastid	31.14	8.41
CDX92121	Canola	mitochondrion	25.15	8.33
CDX95864	Canola	mitochondrion	25.15	8.3
KRH71332	Soybean	cytosol	4.19	5.65
CDY09711	Canola	plasma membrane	10.18	4.49
GSMUA_Achr9P21540_001	Banana	cytosol	2.99	3.12
CDX93023	Canola	cytosol, mitochondrion	1.2	2.94

Protein Annotations

EnsemblPlants:CDX94793	EnsemblPlantsGene:GSBRNA2T00158271001	Gene3D:3.50.50.60	GO:A0A078E5U1	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
InterPro:IPR036188	PANTHER:PTHR43256	PANTHER:PTHR43256:SF4	PFAM:PF07992	ProteinID:CDX94793	ProteinID:CDX94793.1
SUPFAM:SSF51905	UniParc:UPI0004EF3AB4	MapMan:35.1	:	:	:

Description

BnaC03g43950D

Coordinates

chrLK031885:-:36847..39534

Molecular Weight (calculated)

18851.0 Da

IEP (calculated)

8.654

GRAVY (calculated)

0.019

Length

167 amino acids

Sequence
(BLAST)

001: MLKPYFQLDI SVYIILLNNA NVKLIEGRGK VIDPHTIDVD GKIYTSRNIL IAVGGHPFIP DIPGREYAID FPSNAKKIAI VGGGYIALEF AGIFNGLNIE
101: VHVFIRQKKV LRGFDEDFRD FHVMFATGRK PNTKYDFDHW CNVWCYKHNL GLENVGVKLA KTGAIEV

Best Arabidopsis Sequence Match ( AT3G54660.1 )
(BLAST)

001: MASTPKLTST ISSSSPSLQF LCKKLPIAIH LPSSSSSSFL SLPKTLTSLY SLRPRIALLS NHRYYHSRRF SVCASTDNGA ESDRHYDFDL FTIGAGSGGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV

Arabidopsis Description

EMB2360At3g54660 [Source:UniProtKB/TrEMBL;Acc:Q5FV38]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.