CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG30729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54660.1	KXG30729	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0415300-02	Rice	plastid	77.4	74.19
EER95455	Sorghum	plastid	71.94	69.45
GSMUA_Achr3P29340_001	Banana	plastid	68.36	64.94
VIT_07s0141g00390.t01	Wine grape	plastid	65.54	62.25
KRH71329	Soybean	plastid	63.65	62.02
KRH32102	Soybean	plastid	63.47	61.83
CDX94793	Canola	endoplasmic reticulum	19.4	61.68
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	64.41	61.51
Solyc09g065900.2.1	Tomato	plastid	64.41	61.4
CDY69892	Canola	plastid	64.78	61.21
CDX73461	Canola	plastid	64.41	60.96
Bra007087.1-P	Field mustard	plastid	64.41	60.75
AT3G54660.1	Thale cress	plastid	64.6	60.71
CDY13217	Canola	plastid	63.84	56.31
CDX76141	Canola	plastid	62.52	54.88
Bra014801.1-P	Field mustard	plastid	63.28	54.63
KXG31334	Sorghum	cytosol	45.01	48.28
GSMUA_Achr9P21540_001	Banana	cytosol	13.37	44.38
KRH71332	Soybean	cytosol	9.79	41.94
EES02889	Sorghum	mitochondrion	25.61	26.98
KXG32441	Sorghum	plastid	28.25	26.74
EES19070	Sorghum	plastid	27.87	26.33
EES17766	Sorghum	mitochondrion	24.48	26.0

Protein Annotations

MapMan:10.4.1.4	Gene3D:3.50.50.60	UniProt:A0A1Z5S774	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668	GO:GO:0019725
GO:GO:0045454	GO:GO:0050660	GO:GO:0055114	InterPro:IPR016156	InterPro:IPR036188	EnsemblPlants:OQU91783
ProteinID:OQU91783	ProteinID:OQU91783.1	PFAM:PF02852	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00411
ScanProsite:PS00076	PANTHER:PTHR43256	PANTHER:PTHR43256:SF4	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nucl-diS_OxRdtase_dimer	EnsemblPlantsGene:SORBI_3001G248500
SUPFAM:SSF51905	SUPFAM:SSF55424	UniParc:UPI0001A82047	RefSeq:XP_002464624.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:26612839..26616078

Molecular Weight (calculated)

56545.9 Da

IEP (calculated)

9.799

GRAVY (calculated)

-0.126

Length

531 amino acids

Sequence
(BLAST)

001: MAAATLPSAS AKAAVRNLGR AVSSRQPLLL LLHASSRRGL LPHPLVASAK SQGAHLRRPL SVSASAAATG GNNGAAPRAA EREYDYDLFT IGAGSGGMRA
101: SRVASALYGA RAAVCEMPFA TVASDALGGV GGTCVLRGCV PKKLLVYASK YSHEFEESRG FGWVYGTDPK HDWRTLITNK NLELQRLVGI QTNTLKNSGV
201: TVIEGRGKIV DPHTVSVDGK HYTAKNILVA VGGRPSKPNI PGIEHVIDSD AALDLPSRPE KIAIVGGGYI ALEFAGIFNG LKSDVHVFIR QKKVLRGFDE
301: EVRDFVAEQM SLRGVKFHTA QSPVAVTKSD DGLLSLKTNK ETVSGFSHVM FATGRKPNTK NLGLEDVGVK MDEHGAIVVD EYSRTSVDSI WAVGDVTNRL
401: NLTPIALMEA GAIARTIFGD EPIRADYSAV PSAVFSQPPI GHVGLTEDEV IVCAKTNKVL GVHMCGEDAP EIIQGIAIAV KAGLTKQNFD STIGVHPTTA
501: EEFVTMRNPT RKLRRRTTAE AKTKDKAASQ K

Best Arabidopsis Sequence Match ( AT3G54660.1 )
(BLAST)

001: MASTPKLTST ISSSSPSLQF LCKKLPIAIH LPSSSSSSFL SLPKTLTSLY SLRPRIALLS NHRYYHSRRF SVCASTDNGA ESDRHYDFDL FTIGAGSGGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV

Arabidopsis Description

EMB2360At3g54660 [Source:UniProtKB/TrEMBL;Acc:Q5FV38]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.