Factsheet for GSMUA_Achr9P21540_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P14860_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54660.1	GSMUA_Achr9P14860_001	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71332	Soybean	cytosol	25.0	32.26
GSMUA_Achr3P29340_001	Banana	plastid	60.0	17.17
VIT_07s0141g00390.t01	Wine grape	plastid	59.38	16.99
TraesCS4A01G025200.1	Wheat	golgi	56.25	16.36
TraesCS4D01G277400.1	Wheat	golgi	56.25	16.3
TraesCS4B01G278900.1	Wheat	plastid	55.62	16.18
AT3G54660.1	Thale cress	plastid	56.88	16.11
CDX73461	Canola	plastid	56.25	16.04
CDY69892	Canola	plastid	56.25	16.01
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	55.62	16.01
Zm00001d027769_P001	Maize	plastid	55.0	16.0
Bra007087.1-P	Field mustard	plastid	56.25	15.99
Os03t0163300-01	Rice	plastid	55.0	15.86
Solyc09g065900.2.1	Tomato	plastid	55.0	15.8
KRH71329	Soybean	plastid	53.75	15.78
EER95455	Sorghum	plastid	53.75	15.64
KRH32102	Soybean	plastid	53.12	15.6
Os10t0415300-02	Rice	plastid	53.75	15.52
GSMUA_AchrUn_...	Banana	cytosol	34.38	15.32
HORVU4Hr1G073930.1	Barley	mitochondrion, plastid	55.0	14.92
CDX76141	Canola	plastid	55.62	14.71
CDY13217	Canola	plastid	54.38	14.45
Bra014801.1-P	Field mustard	plastid	55.0	14.31
GSMUA_Achr1P10930_001	Banana	cytosol	41.25	13.52
OQU91783	Sorghum	plastid	44.38	13.37
GSMUA_AchrUn_...	Banana	cytosol	6.25	10.75
GSMUA_Achr2P02040_001	Banana	mitochondrion	23.12	7.91
GSMUA_Achr11P...	Banana	mitochondrion	22.5	7.69
GSMUA_Achr3P12660_001	Banana	plastid	25.62	7.23
GSMUA_Achr1P18490_001	Banana	plastid	7.5	4.23
CDX94793	Canola	endoplasmic reticulum	3.12	2.99

Protein Annotations

Gene3D:3.30.390.30	MapMan:35.1	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr9G21540_001
EnsemblPlants:GSMUA_Achr9P21540_001	EnsemblPlants:GSMUA_Achr9T21540_001	InterPro:IPR016156	UniProt:M0U2B3	PFAM:PF02852	PANTHER:PTHR43256
PANTHER:PTHR43256:SF4	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF55424	UniParc:UPI000295D06F	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G21540_001]

Coordinates

chr9:+:26660760..26662773

Molecular Weight (calculated)

17478.4 Da

IEP (calculated)

6.472

GRAVY (calculated)

0.349

Length

160 amino acids

Sequence
(BLAST)

001: MHDLQESGGR CASTSFCCFF YPIYIPCCID GREGHLLKLC LVMNPQNQIT DFCALCCIFP ASNWTSWLLK SVGDVDIFTA NFRPLKATLS GLPDWVFMKL
101: IVCANTNKVL GVHMCGEDSP KIIQGIAIAV KAGLTKADFD VTVGIHPTSA EELVAMRSPT

Best Arabidopsis Sequence Match ( AT3G54660.1 )
(BLAST)

001: MASTPKLTST ISSSSPSLQF LCKKLPIAIH LPSSSSSSFL SLPKTLTSLY SLRPRIALLS NHRYYHSRRF SVCASTDNGA ESDRHYDFDL FTIGAGSGGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV

Arabidopsis Description

EMB2360At3g54660 [Source:UniProtKB/TrEMBL;Acc:Q5FV38]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.