Factsheet for TraesCS4A01G025200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G318800.1
TraesCS6B01G349000.1
TraesCS6D01G298000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54660.1	TraesCS6A01G318800.1	AT5G09420.1	17981999
AT3G54660.1	TraesCS6B01G349000.1	AT5G09420.1	17981999
AT3G54660.1	TraesCS6D01G298000.1	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G277400.1	Wheat	golgi	98.73	98.37
TraesCS4B01G278900.1	Wheat	plastid	98.36	98.36
HORVU4Hr1G073930.1	Barley	mitochondrion, plastid	96.91	90.34
Os03t0163300-01	Rice	plastid	86.73	85.95
EER95455	Sorghum	plastid	84.36	84.36
Zm00001d027769_P001	Maize	plastid	83.82	83.82
GSMUA_Achr3P29340_001	Banana	plastid	74.18	72.99
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	71.64	70.86
Solyc09g065900.2.1	Tomato	plastid	71.45	70.56
KRH32102	Soybean	plastid	69.82	70.46
AT3G54660.1	Thale cress	plastid	72.36	70.44
CDY69892	Canola	plastid	71.64	70.11
CDX73461	Canola	plastid	71.27	69.88
KRH71329	Soybean	plastid	69.09	69.72
VIT_07s0141g00390.t01	Wine grape	plastid	70.73	69.59
Bra007087.1-P	Field mustard	plastid	71.09	69.45
CDX94793	Canola	endoplasmic reticulum	20.0	65.87
CDY13217	Canola	plastid	71.09	64.95
CDX76141	Canola	plastid	69.82	63.47
Bra014801.1-P	Field mustard	plastid	70.36	62.93
KRH71332	Soybean	cytosol	13.64	60.48
GSMUA_Achr9P21540_001	Banana	cytosol	16.36	56.25
TraesCS6A01G383800.1	Wheat	cytosol	46.36	50.7
TraesCS1A01G099500.2	Wheat	plastid	28.73	27.82
TraesCS1A01G105600.1	Wheat	mitochondrion	24.18	26.49
TraesCS1A01G066400.1	Wheat	mitochondrion	23.82	26.04

Protein Annotations

KEGG:00480+1.8.1.7	MapMan:10.4.1.4	Gene3D:3.30.390.30	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004362	GO:GO:0005488
GO:GO:0005507	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668	GO:GO:0019725
GO:GO:0045454	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	InterPro:Glut-diS_reduct	InterPro:IPR016156
InterPro:IPR036188	PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411
ScanProsite:PS00076	PANTHER:PTHR43256	PANTHER:PTHR43256:SF4	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer
SUPFAM:SSF51905	SUPFAM:SSF55424	TIGRFAMs:TIGR01424	EnsemblPlantsGene:TraesCS4A01G025200	EnsemblPlants:TraesCS4A01G025200.1	SEG:seg

Description

No Description!

Coordinates

chr4A:-:17264008..17267851

Molecular Weight (calculated)

59368.2 Da

IEP (calculated)

8.359

GRAVY (calculated)

-0.165

Length

550 amino acids

Sequence
(BLAST)

001: MATTAALPFS CATTVQTLTR TLSPRRSLLI HRHRLRSLAA SPRLPDRARP RLRRPVSASA APNGSSSGGE HDYDLFTIGA GSGGVRASRF ASTLYGARAA
101: ICEMPFSTIS ADDLGGLGGT CVLRGCVPKK LLVYASKFSH EFEESHGFGW TYDTDPKHDW STLIANKNTE LQRLVGIYKN ILKNANVDLI EGRGKVVDPH
201: TVSVDGKLYT AKNILIAVGG RPSMPDIPGI EHVIDSDAAL DLPSKPEKIA IVGGGYIALE FAGIFNGLKS DVHVFIRQPK VLRGFDEEVR DFVAEQMSLR
301: GITFHTEHSP QAITKSNDGL LSLKTNKETI GGFSHVMFAT GRKPNTKNLG LEEVGVKMDK KGAIVVDGYS RTSVDSIWAV GDVTDRINLT PVALMEGGAF
401: AKTLFGDEPT KPEYRAVPAA VFSQPPIGQV GLTEEQAIEE YGDVDVYLSN FRPLRATLSG LPDRVLMKLI VCATTNKVVG VHMCGDDAPE IIQGIAIGVK
501: AGLTKQDFDV TVGVHPTSAE EFVTMRSPTR KVRRKTAAEA ESKDEVVTQK

Best Arabidopsis Sequence Match ( AT3G54660.1 )
(BLAST)

001: MASTPKLTST ISSSSPSLQF LCKKLPIAIH LPSSSSSSFL SLPKTLTSLY SLRPRIALLS NHRYYHSRRF SVCASTDNGA ESDRHYDFDL FTIGAGSGGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV

Arabidopsis Description

EMB2360At3g54660 [Source:UniProtKB/TrEMBL;Acc:Q5FV38]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.