Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS6A01G318800.1 | |
TraesCS6B01G349000.1 | |
TraesCS6D01G298000.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G54660.1 | TraesCS6A01G318800.1 | AT5G09420.1 | 17981999 |
AT3G54660.1 | TraesCS6B01G349000.1 | AT5G09420.1 | 17981999 |
AT3G54660.1 | TraesCS6D01G298000.1 | AT5G09420.1 | 17981999 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4A01G025200.1 | Wheat | golgi | 98.36 | 98.36 |
TraesCS4D01G277400.1 | Wheat | golgi | 98.55 | 98.19 |
HORVU4Hr1G073930.1 | Barley | mitochondrion, plastid | 97.27 | 90.68 |
Os03t0163300-01 | Rice | plastid | 87.09 | 86.31 |
EER95455 | Sorghum | plastid | 84.18 | 84.18 |
Zm00001d027769_P001 | Maize | plastid | 83.64 | 83.64 |
GSMUA_Achr3P29340_001 | Banana | plastid | 74.0 | 72.81 |
AT3G54660.1 | Thale cress | plastid | 72.91 | 70.97 |
KRH32102 | Soybean | plastid | 70.18 | 70.83 |
PGSC0003DMT400019491 | Potato | cytosol, extracellular, plastid | 71.45 | 70.68 |
CDY69892 | Canola | plastid | 72.18 | 70.64 |
CDX73461 | Canola | plastid | 71.82 | 70.41 |
Solyc09g065900.2.1 | Tomato | plastid | 71.27 | 70.38 |
KRH71329 | Soybean | plastid | 69.45 | 70.09 |
Bra007087.1-P | Field mustard | plastid | 71.64 | 69.98 |
VIT_07s0141g00390.t01 | Wine grape | plastid | 70.91 | 69.77 |
CDX94793 | Canola | endoplasmic reticulum | 20.18 | 66.47 |
CDY13217 | Canola | plastid | 71.64 | 65.45 |
CDX76141 | Canola | plastid | 70.18 | 63.8 |
Bra014801.1-P | Field mustard | plastid | 70.91 | 63.41 |
KRH71332 | Soybean | cytosol | 13.64 | 60.48 |
GSMUA_Achr9P21540_001 | Banana | cytosol | 16.18 | 55.62 |
TraesCS6B01G423100.1 | Wheat | cytosol | 46.18 | 51.11 |
TraesCS6B01G423000.1 | Wheat | cytosol | 41.27 | 45.22 |
TraesCS1B01G124900.1 | Wheat | plastid | 28.91 | 26.99 |
TraesCS1B01G131300.1 | Wheat | mitochondrion | 24.18 | 26.49 |
TraesCS1B01G084700.1 | Wheat | mitochondrion | 24.0 | 26.24 |
Protein Annotations
KEGG:00480+1.8.1.7 | MapMan:10.4.1.4 | Gene3D:3.30.390.30 | Gene3D:3.50.50.60 | InterPro:FAD/NAD-bd_sf | InterPro:FAD/NAD-binding_dom |
InterPro:FAD/NAD-linked_Rdtase_dimer_sf | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004362 | GO:GO:0005488 |
GO:GO:0005507 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005739 | GO:GO:0006749 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009507 |
GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009987 | GO:GO:0016491 | GO:GO:0016668 | GO:GO:0019725 |
GO:GO:0045454 | GO:GO:0050660 | GO:GO:0050661 | GO:GO:0055114 | InterPro:Glut-diS_reduct | InterPro:IPR016156 |
InterPro:IPR036188 | PFAM:PF02852 | PFAM:PF07992 | PIRSF:PIRSF000350 | PRINTS:PR00368 | PRINTS:PR00411 |
ScanProsite:PS00076 | PANTHER:PTHR43256 | PANTHER:PTHR43256:SF4 | InterPro:Pyr_OxRdtase_I_AS | InterPro:Pyr_nuc-diS_OxRdtase | InterPro:Pyr_nucl-diS_OxRdtase_dimer |
SUPFAM:SSF51905 | SUPFAM:SSF55424 | TIGRFAMs:TIGR01424 | EnsemblPlantsGene:TraesCS4B01G278900 | EnsemblPlants:TraesCS4B01G278900.1 | SEG:seg |
Description
No Description!
Coordinates
chr4B:+:562349013..562353047
Molecular Weight (calculated)
59570.5 Da
IEP (calculated)
7.914
GRAVY (calculated)
-0.168
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTAALPFS CATTLQTLTR TLSPRRSLLI HRHRLRSLAA SPRLPDRPRP RLHRPVSASA APNGSSSAGE YDYDLFTIGA GSGGVRASRF ATTLYGARAA
101: ICEMPFSTIS ADDLGGLGGT CVLRGCVPKK LLVYASKFSH EFEESHGFGW TYDTDPKHDW STLIANKNTE LQRLVGIYKN ILKNANVDLI EGRGKVVDPH
201: TVSVDGKLYT AKNILIAVGG RPSMPDIPGI EHVIDSDAAL DLPSKPEKIA IVGGGYIALE FAGIFNGLKS DVHVFIRQPK VLRGFDEEVR DFVAEQMSLR
301: GITFHTEHSP QAITKSNDGL LSLKTNKETI GGFSHVMFAT GRKPNTKNLG LEEVGVKMDK KGAIVVDEYS RTSVDSIWAV GDVTDRINLT PVALMEGGAF
401: VKTLFGDEPT KPEYRAVPAA VFSQPPIGQV GLTEEQAIEE YGDVDVYLSN FRPLRATLSG LPDRVLMKLI VCATTNKVVG VHMCGDDAPE IIQGIAIGVK
501: AGLTKQDFDV TVGVHPTSAE EFVTMRNPTR KVRRKTAAEA ESKDEVVTQK
101: ICEMPFSTIS ADDLGGLGGT CVLRGCVPKK LLVYASKFSH EFEESHGFGW TYDTDPKHDW STLIANKNTE LQRLVGIYKN ILKNANVDLI EGRGKVVDPH
201: TVSVDGKLYT AKNILIAVGG RPSMPDIPGI EHVIDSDAAL DLPSKPEKIA IVGGGYIALE FAGIFNGLKS DVHVFIRQPK VLRGFDEEVR DFVAEQMSLR
301: GITFHTEHSP QAITKSNDGL LSLKTNKETI GGFSHVMFAT GRKPNTKNLG LEEVGVKMDK KGAIVVDEYS RTSVDSIWAV GDVTDRINLT PVALMEGGAF
401: VKTLFGDEPT KPEYRAVPAA VFSQPPIGQV GLTEEQAIEE YGDVDVYLSN FRPLRATLSG LPDRVLMKLI VCATTNKVVG VHMCGDDAPE IIQGIAIGVK
501: AGLTKQDFDV TVGVHPTSAE EFVTMRNPTR KVRRKTAAEA ESKDEVVTQK
001: MASTPKLTST ISSSSPSLQF LCKKLPIAIH LPSSSSSSFL SLPKTLTSLY SLRPRIALLS NHRYYHSRRF SVCASTDNGA ESDRHYDFDL FTIGAGSGGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV
Arabidopsis Description
EMB2360At3g54660 [Source:UniProtKB/TrEMBL;Acc:Q5FV38]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.