CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG30729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54660.1	KXG30729	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027769_P001	Maize	plastid	96.36	96.36
Os03t0163300-01	Rice	plastid	87.45	86.67
TraesCS4A01G025200.1	Wheat	golgi	84.36	84.36
TraesCS4D01G277400.1	Wheat	golgi	84.55	84.24
TraesCS4B01G278900.1	Wheat	plastid	84.18	84.18
HORVU4Hr1G073930.1	Barley	mitochondrion, plastid	84.91	79.15
GSMUA_Achr3P29340_001	Banana	plastid	76.36	75.13
OQU91783	Sorghum	plastid	69.45	71.94
KRH32102	Soybean	plastid	71.09	71.74
KRH71329	Soybean	plastid	70.18	70.83
Solyc09g065900.2.1	Tomato	plastid	71.45	70.56
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	70.91	70.14
VIT_07s0141g00390.t01	Wine grape	plastid	71.27	70.13
AT3G54660.1	Thale cress	plastid	70.91	69.03
CDY69892	Canola	plastid	70.36	68.86
CDX73461	Canola	plastid	70.0	68.63
Bra007087.1-P	Field mustard	plastid	70.0	68.38
CDY13217	Canola	plastid	70.0	63.95
CDX94793	Canola	endoplasmic reticulum	19.09	62.87
CDX76141	Canola	plastid	68.36	62.15
Bra014801.1-P	Field mustard	plastid	69.45	62.11
KRH71332	Soybean	cytosol	13.64	60.48
GSMUA_Achr9P21540_001	Banana	cytosol	15.64	53.75
KXG31334	Sorghum	cytosol	48.36	53.74
EES19070	Sorghum	plastid	29.09	28.47
KXG32441	Sorghum	plastid	28.73	28.16
EES02889	Sorghum	mitochondrion	24.0	26.19
EES17766	Sorghum	mitochondrion	23.64	26.0

Protein Annotations

KEGG:00480+1.8.1.7	MapMan:10.4.1.4	Gene3D:3.30.390.30	Gene3D:3.50.50.60	EntrezGene:8059844	UniProt:C5WWX0
EnsemblPlants:EER95455	ProteinID:EER95455	ProteinID:EER95455.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf
GO:GO:0000166	GO:GO:0000305	GO:GO:0003674	GO:GO:0003824	GO:GO:0004362	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091
GO:GO:0006749	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0022900
GO:GO:0045454	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	GO:GO:0098869	InterPro:Glut-diS_reduct
InterPro:IPR016156	InterPro:IPR036188	PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350	PRINTS:PR00368
PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR43256	PANTHER:PTHR43256:SF4	MetaCyc:PWY-4081	InterPro:Pyr_OxRdtase_I_AS
InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	EnsemblPlantsGene:SORBI_3001G495200	SUPFAM:SSF51905	SUPFAM:SSF55424	unigene:Sbi.8447
TIGRFAMs:TIGR01424	UniParc:UPI0001A82F7D	RefSeq:XP_002468457.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:76463309..76468061

Molecular Weight (calculated)

59344.1 Da

IEP (calculated)

7.629

GRAVY (calculated)

-0.137

Length

550 amino acids

Sequence
(BLAST)

001: MAAHATLPFS CSSTLQTLTR TLSPRGTHQL RRGFLRLPSL AALPRLARPC RRHVSASAAA APNGASAEGE YDYDLFTIGA GSGGVRASRF ASTLHGARVA
101: ICEMPFATIA SDELGGLGGT CVLRGCVPKK LLVYGSKYSH EFEESRGFGW TYETDPKHDW NTLIANKNTE LQRLVGIYRN ILNNAGVTLI EGRGKIVDAH
201: TVSVNGKLYT AKHILVGVGG RPSMPDIPGI EHVIDSDAAL DLPSKPEKIA IVGGGYIALE FAGIFNGLKS EVHVFIRQKK VLRGFDEEVR DFVAEQMSLR
301: GITFHTEESP QAITKSNDGL LSLKTNKETF GGFSHVMFAT GRRPNTKNLG LEEVGVEMDK NGAIVVDEYS RTSVDSIWAV GDVTNRVNLT PVALMEGGAF
401: AKTVFGNEPT KPDYRTIPSA VFSQPPIGQV GLTEEQAIEE YGDVDVFVAN FRPLKATLSG LPDRVLMKIL VCATSNKVVG VHMCGDDAPE IIQGIAIAVK
501: AGLTKQDFDA TIGIHPTSAE EFVTMRSATR KIRKKSADQV ESKDEVVSKQ

Best Arabidopsis Sequence Match ( AT3G54660.1 )
(BLAST)

001: MASTPKLTST ISSSSPSLQF LCKKLPIAIH LPSSSSSSFL SLPKTLTSLY SLRPRIALLS NHRYYHSRRF SVCASTDNGA ESDRHYDFDL FTIGAGSGGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV

Arabidopsis Description

EMB2360At3g54660 [Source:UniProtKB/TrEMBL;Acc:Q5FV38]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.