CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG37587
KXG37588

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17240.1	KXG37587	AT4G14640.1	17360592
AT3G17240.1	KXG37588	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G105600.1	Wheat	mitochondrion	89.0	88.65
TraesCS1D01G109600.1	Wheat	mitochondrion	88.8	88.45
TraesCS1B01G131300.1	Wheat	mitochondrion	88.8	88.45
EES02889	Sorghum	mitochondrion	86.8	86.11
GSMUA_Achr11P...	Banana	mitochondrion	76.6	81.84
GSMUA_Achr2P02040_001	Banana	mitochondrion	76.4	81.62
HORVU1Hr1G023630.1	Barley	cytosol, mitochondrion, plastid	88.4	81.1
Solyc05g053300.2.1	Tomato	extracellular, mitochondrion, nucleus, plastid, unclear	79.4	79.4
PGSC0003DMT400069840	Potato	mitochondrion	79.4	79.4
VIT_05s0020g00380.t01	Wine grape	mitochondrion	79.4	79.08
KRH50629	Soybean	mitochondrion	78.0	78.0
KRH02419	Soybean	mitochondrion	77.8	77.8
PGSC0003DMT400011741	Potato	mitochondrion	78.0	77.38
Solyc12g099100.1.1	Tomato	plastid	77.6	76.98
CDX92121	Canola	mitochondrion	76.8	76.19
Bra022204.1-P	Field mustard	mitochondrion	76.8	76.19
AT1G48030.3	Thale cress	mitochondrion	77.0	75.94
AT3G17240.1	Thale cress	mitochondrion	77.0	75.94
CDX95864	Canola	mitochondrion	76.8	75.89
CDX93639	Canola	mitochondrion	76.8	75.74
Bra018700.1-P	Field mustard	mitochondrion	76.6	75.54
CDY20935	Canola	mitochondrion	76.4	75.35
KXG32441	Sorghum	plastid	34.0	30.3
EES19070	Sorghum	plastid	33.4	29.72
KXG31334	Sorghum	cytosol	26.8	27.07
OQU91783	Sorghum	plastid	26.0	24.48
EER95455	Sorghum	plastid	26.0	23.64

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
MapMan:1.3.4.3	MapMan:2.2.1.3	MapMan:2.3.4.3	Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:4.2.7.2.3
EntrezGene:8071199	UniProt:C5Z0N4	EnsemblPlants:EES17766	ProteinID:EES17766	ProteinID:EES17766.1	InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004148
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0022900
GO:GO:0045454	GO:GO:0050660	GO:GO:0055114	InterPro:IPR016156	InterPro:IPR036188	InterPro:Lipoamide_DH
PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076
PANTHER:PTHR22912	PANTHER:PTHR22912:SF151	MetaCyc:PWY-5046	MetaCyc:PWY-5084	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase
InterPro:Pyr_nucl-diS_OxRdtase_dimer	EnsemblPlantsGene:SORBI_3009G054600	SUPFAM:SSF51905	SUPFAM:SSF55424	unigene:Sbi.9834	TIGRFAMs:TIGR01350
UniParc:UPI0001A8884C	RefSeq:XP_002439336.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:5532984..5536836

Molecular Weight (calculated)

53026.5 Da

IEP (calculated)

7.026

GRAVY (calculated)

0.041

Length

500 amino acids

Sequence
(BLAST)

001: MAMASLARRR AADALLRRPQ AGAWASALRA YATIEDTDVV VVGGGPGGYV AAIKAAQLGL RTTCIEKRGT LGGTCLNVGC IPSKALLHSS HMYHEAKSSF
101: AHHGVKFSNL EIDLPAMMSQ KDKAVAGLTK GIEGLFMKNK VEYVRGIGRL VSPSEVAVDL LDGGCTTVKG KNIIIATGSD VKSLPGVHID EKKIVSSTGA
201: LALKEIPKKL VVIGAGYIGL EMGSVWNRLG SEVTVVEFAR DIVPSMDGEI RKQFQRMLEK QKMKFMLKTK VIGVDTSGSG VKLTVEPAAG GEQSVLDADI
301: VLVSAGRTPY TADLGLDTIG VEMDKGGRIL VDKRFMTNVN GVYAIGDVIP GPMLAHKAEE DGIACVEFIA GKEGHVDYDS VPGVVYTHPE VASVGKTEEQ
401: VKESGIAYQV GKFPLLANSR AKAIDDAEGL VKVVAEKETD RVLGVHIMAP NAGEIIHEAV LALQYGASSE DIARTCHAHP TVSEALKEAC LDTYTKPIHM

Best Arabidopsis Sequence Match ( AT1G48030.4 )
(BLAST)

001: MAMASLARRK AYFLTRNLSN SPTDALRFSF SLSRGFASSG SDENDVVIIG GGPGGYVAAI KASQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHSFANH GIKVSSVEVD LPAMLAQKDN AVKNLTRGIE GLFKKNKVTY VKGYGKFISP NEVSVETIDG GNTIVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL SEVPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAGDIV PSMDGEIRKQ FQRSLEKQKM KFMLKTKVVS VDSSSDGVKL TVEPAEGGEQ
301: SILEADVVLV SAGRTPFTSG LDLEKIGVET DKAGRILVND RFLSNVPGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTHPEVAS
401: VGKTEEQLKK EGVSYRVGKF PFMANSRAKA IDNAEGLVKI LADKETDKIL GVHIMAPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EALKEAAMAT
501: YDKPIHI

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M5K3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.