Factsheet for Bra022204.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17240.1	Bra039723.1-P	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92121	Canola	mitochondrion	99.4	99.4
AT3G17240.1	Thale cress	mitochondrion	95.63	95.07
Bra018700.1-P	Field mustard	mitochondrion	94.05	93.49
KRH50629	Soybean	mitochondrion	85.32	86.0
KRH02419	Soybean	mitochondrion	85.12	85.8
Solyc05g053300.2.1	Tomato	extracellular, mitochondrion, nucleus, plastid, unclear	84.92	85.6
PGSC0003DMT400069840	Potato	mitochondrion	84.52	85.2
VIT_05s0020g00380.t01	Wine grape	mitochondrion	84.52	84.86
Solyc12g099100.1.1	Tomato	plastid	83.93	83.93
GSMUA_Achr2P02040_001	Banana	mitochondrion	77.78	83.76
PGSC0003DMT400011741	Potato	mitochondrion	83.73	83.73
GSMUA_Achr11P...	Banana	mitochondrion	76.39	82.27
TraesCS1A01G105600.1	Wheat	mitochondrion	79.76	80.08
TraesCS1D01G109600.1	Wheat	mitochondrion	79.56	79.88
TraesCS1B01G131300.1	Wheat	mitochondrion	79.56	79.88
Zm00001d009163_P001	Maize	mitochondrion	77.58	78.36
Os01t0328700-01	Rice	mitochondrion	77.98	78.13
Zm00001d040721_P002	Maize	mitochondrion	77.78	77.93
EES02889	Sorghum	mitochondrion	77.78	77.78
TraesCS1B01G084700.1	Wheat	mitochondrion	77.58	77.73
TraesCS1A01G066400.1	Wheat	mitochondrion	77.38	77.53
TraesCS1D01G067500.1	Wheat	mitochondrion	77.58	77.43
EES17766	Sorghum	mitochondrion	76.19	76.8
HORVU1Hr1G013740.1	Barley	cytosol, mitochondrion	75.79	75.35
HORVU1Hr1G023630.1	Barley	cytosol, mitochondrion, plastid	78.97	73.03
Bra033540.1-P	Field mustard	plastid	33.93	30.37
Bra012738.1-P	Field mustard	peroxisome	12.5	30.29
Bra001645.1-P	Field mustard	plastid	33.73	27.51
Bra015006.1-P	Field mustard	cytosol	26.19	27.16
Bra001931.1-P	Field mustard	cytosol	25.99	27.07
Bra007087.1-P	Field mustard	plastid	25.6	22.91
Bra014801.1-P	Field mustard	plastid	25.2	20.65

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
MapMan:1.3.4.3	MapMan:2.2.1.3	MapMan:2.3.4.3	Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:4.2.7.2.3
EnsemblPlantsGene:Bra022204	EnsemblPlants:Bra022204.1	EnsemblPlants:Bra022204.1-P	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004148	GO:GO:0005488	GO:GO:0005507
GO:GO:0005524	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005747	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491
GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0046686	GO:GO:0048046
GO:GO:0050660	GO:GO:0050897	GO:GO:0055114	InterPro:IPR016156	InterPro:IPR036188	InterPro:Lipoamide_DH
UniProt:M4E0A7	PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411
ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF151	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer
SUPFAM:SSF51905	SUPFAM:SSF55424	TIGRFAMs:TIGR01350	UniParc:UPI0002547619	SEG:seg	:

Description

AT3G17240 (E=2e-248) mtLPD2 | mtLPD2 (LIPOAMIDE DEHYDROGENASE 2); ATP binding / dihydrolipoyl dehydrogenase

Coordinates

chrA05:+:19096907..19099260

Molecular Weight (calculated)

53588.8 Da

IEP (calculated)

7.428

GRAVY (calculated)

-0.025

Length

504 amino acids

Sequence
(BLAST)

001: MAMANLARRK AYLLTRNIST APLRSSFSLS RGFASSGSDE NDVVIIGGGP GGYVAAIKAA QLGLKTTCIE KRGALGGTCL NVGCIPSKAL LHSSHMYHEA
101: KHVFANHGVK VSSVEVDLPA MLAQKDTAVK NLTRGIEGLF KKNKVNYVKG YGKFLSPSEV SVETTDGETT VVKGKHIIVA TGSDVKSLPG ITIDEKKIVS
201: STGALSLSEI PKKLIVIGAG YIGLEMGSVW GRLGSEVTVV EFAADIVPSM DGEIRKQFQR SLEKQKMKFM LKTKVVGVDS SGDGVKLIVE PAEGGDQTTL
301: EADVVLVSAG RSPFTSGLDL DKIGVETDKV GRILVNERFS TNVSGVYAIG DVIPGPMLAH KAEEDGVACV EFIAGKHGHV DYDKVPGVVY TYPEVASVGK
401: TEEQLKKDGV SYRVGKFPFM ANSRAKAIDT AEGLVKILAD KETDKILGVH IMSPNAGELI HEAVLAINYD ASSEDIARVC HAHPTMSEAI KEAAMATYDK
501: PIHM

Best Arabidopsis Sequence Match ( AT3G17240.1 )
(BLAST)

001: MAMASLARRK AYFLTRNISN SPTDAFRFSF SLTRGFASSG SDDNDVVIIG GGPGGYVAAI KAAQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHVFANH GVKVSSVEVD LPAMLAQKDT AVKNLTRGVE GLFKKNKVNY VKGYGKFLSP SEVSVDTIDG ENVVVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL TEIPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAADIV PAMDGEIRKQ FQRSLEKQKM KFMLKTKVVG VDSSGDGVKL IVEPAEGGEQ
301: TTLEADVVLV SAGRTPFTSG LDLEKIGVET DKGGRILVNE RFSTNVSGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTYPEVAS
401: VGKTEEQLKK EGVSYNVGKF PFMANSRAKA IDTAEGMVKI LADKETDKIL GVHIMSPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EAIKEAAMAT
501: YDKPIHM

Arabidopsis Description

LPD2Dihydrolipoyl dehydrogenase 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M5K2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.