Factsheet for Zm00001d040721_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d033980_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17240.1	Zm00001d033980_P001	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02889	Sorghum	mitochondrion	98.01	97.82
Zm00001d009163_P001	Maize	mitochondrion	97.02	97.8
Os01t0328700-01	Rice	mitochondrion	92.05	92.05
TraesCS1B01G084700.1	Wheat	mitochondrion	90.06	90.06
TraesCS1A01G066400.1	Wheat	mitochondrion	90.06	90.06
TraesCS1D01G067500.1	Wheat	mitochondrion	90.26	89.9
HORVU1Hr1G013740.1	Barley	cytosol, mitochondrion	86.68	86.0
GSMUA_Achr11P...	Banana	mitochondrion	78.13	83.97
GSMUA_Achr2P02040_001	Banana	mitochondrion	77.34	83.12
Solyc05g053300.2.1	Tomato	extracellular, mitochondrion, nucleus, plastid, unclear	81.71	82.2
PGSC0003DMT400069840	Potato	mitochondrion	81.71	82.2
VIT_05s0020g00380.t01	Wine grape	mitochondrion	80.91	81.08
PGSC0003DMT400011741	Potato	mitochondrion	80.32	80.16
KRH50629	Soybean	mitochondrion	79.32	79.8
Solyc12g099100.1.1	Tomato	plastid	79.92	79.76
KRH02419	Soybean	mitochondrion	78.93	79.4
AT1G48030.3	Thale cress	mitochondrion	78.93	78.3
CDX93639	Canola	mitochondrion	78.53	77.91
Bra022204.1-P	Field mustard	mitochondrion	77.93	77.78
Bra018700.1-P	Field mustard	mitochondrion	78.33	77.71
CDX92121	Canola	mitochondrion	77.73	77.58
CDY20935	Canola	mitochondrion	78.13	77.51
CDX95864	Canola	mitochondrion	77.73	77.27
AT3G17240.1	Thale cress	mitochondrion	77.73	77.12
Zm00001d009779_P002	Maize	plastid	34.39	29.57
Zm00001d009212_P004	Maize	extracellular	33.8	27.69
Zm00001d018454_P004	Maize	cytosol	25.65	24.39
Zm00001d027769_P001	Maize	plastid	25.84	23.64

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
MapMan:1.3.4.3	EntrezGene:103650140	MapMan:2.2.1.3	MapMan:2.3.4.3	Gene3D:3.30.390.30	Gene3D:3.50.50.60
MapMan:4.2.7.2.3	UniProt:A0A1D6MSE3	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004148	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491
GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114
InterPro:IPR016156	InterPro:IPR036188	InterPro:Lipoamide_DH	ProteinID:ONM31876.1	PFAM:PF02852	PFAM:PF07992
PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF151
InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	TIGRFAMs:TIGR01350
UniParc:UPI0001CA8EE6	EnsemblPlantsGene:Zm00001d040721	EnsemblPlants:Zm00001d040721_P002	EnsemblPlants:Zm00001d040721_T002	SEG:seg	:

Description

Dihydrolipoyl dehydrogenase 2 mitochondrial

Coordinates

chr3:-:59860481..59869531

Molecular Weight (calculated)

52699.0 Da

IEP (calculated)

7.816

GRAVY (calculated)

0.112

Length

503 amino acids

Sequence
(BLAST)

001: MALAILARRR AAAAVLRRPQ TAAGAAVSAW RAYAAAGEES DVVVVGGGPG GYVAAIKAAQ LGLKTTCIEK RGTLGGTCLN VGCIPSKALL HSSHMYHEAK
101: SSFAHHGVKF SNLEVDLPAM MAQKDKAVAG LTKGIEGLFK KNKVTYVKGF GKLSSPSEVS VDLIDGGSTI VKGKNIIIAT GSDVKSLPGI TIDEKKVVSS
201: TGALCLSEIP KKLVVIGAGY IGLEMGSVWN RLGSEVTVVE FAPDIVPSMD GEVRKQFQRM LEKQKFKFML KTKVVGCDTS GDGVKLTLEP AAGGEQTILE
301: ADVVLVSAGR SPFTSGIGLE TLGVETDKAG RILVDKRFMT NVKGVYAIGD AIPGPMLAHK AEEDGVACVE FIAGKEGHVD YGTVPGVVYT HPEVASVGKT
401: EEQVKALGIA YNVGKFPLLA NSRAKAIDDA EGVVKVIAEK ETDKILGVHI MAPNAGEIIH EAVVALQYGA SSEDVARTCH AHPTVSEALK EACLQTFDKA
501: IHI

Best Arabidopsis Sequence Match ( AT1G48030.4 )
(BLAST)

001: MAMASLARRK AYFLTRNLSN SPTDALRFSF SLSRGFASSG SDENDVVIIG GGPGGYVAAI KASQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHSFANH GIKVSSVEVD LPAMLAQKDN AVKNLTRGIE GLFKKNKVTY VKGYGKFISP NEVSVETIDG GNTIVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL SEVPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAGDIV PSMDGEIRKQ FQRSLEKQKM KFMLKTKVVS VDSSSDGVKL TVEPAEGGEQ
301: SILEADVVLV SAGRTPFTSG LDLEKIGVET DKAGRILVND RFLSNVPGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTHPEVAS
401: VGKTEEQLKK EGVSYRVGKF PFMANSRAKA IDNAEGLVKI LADKETDKIL GVHIMAPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EALKEAAMAT
501: YDKPIHI

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M5K3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.