CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17240.1	KRH31638	AT4G14640.1	17360592
AT3G17240.1	KRH69070	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50629	Soybean	mitochondrion	98.0	98.0
Solyc05g053300.2.1	Tomato	extracellular, mitochondrion, nucleus, plastid, unclear	86.0	86.0
PGSC0003DMT400069840	Potato	mitochondrion	85.4	85.4
CDX95864	Canola	mitochondrion	86.4	85.38
VIT_05s0020g00380.t01	Wine grape	mitochondrion	85.6	85.26
Bra022204.1-P	Field mustard	mitochondrion	85.8	85.12
CDX92121	Canola	mitochondrion	85.8	85.12
PGSC0003DMT400011741	Potato	mitochondrion	85.8	85.12
GSMUA_Achr11P...	Banana	mitochondrion	79.4	84.83
GSMUA_Achr2P02040_001	Banana	mitochondrion	79.4	84.83
Solyc12g099100.1.1	Tomato	plastid	85.2	84.52
CDX93639	Canola	mitochondrion	85.6	84.42
Bra018700.1-P	Field mustard	mitochondrion	85.4	84.22
AT3G17240.1	Thale cress	mitochondrion	85.2	84.02
CDY20935	Canola	mitochondrion	85.2	84.02
AT1G48030.3	Thale cress	mitochondrion	84.2	83.04
TraesCS1A01G105600.1	Wheat	mitochondrion	80.4	80.08
Zm00001d009163_P001	Maize	mitochondrion	79.8	79.96
TraesCS1D01G109600.1	Wheat	mitochondrion	80.2	79.88
TraesCS1B01G131300.1	Wheat	mitochondrion	80.2	79.88
EES02889	Sorghum	mitochondrion	79.6	78.97
Zm00001d040721_P002	Maize	mitochondrion	79.4	78.93
Os01t0328700-01	Rice	mitochondrion	79.4	78.93
TraesCS1B01G084700.1	Wheat	mitochondrion	78.8	78.33
TraesCS1A01G066400.1	Wheat	mitochondrion	78.8	78.33
TraesCS1D01G067500.1	Wheat	mitochondrion	79.0	78.22
EES17766	Sorghum	mitochondrion	77.8	77.8
HORVU1Hr1G013740.1	Barley	cytosol, mitochondrion	77.6	76.53
HORVU1Hr1G023630.1	Barley	cytosol, mitochondrion, plastid	79.6	73.03
KRH11978	Soybean	endoplasmic reticulum, nucleus	34.0	30.09
KRH02332	Soybean	endoplasmic reticulum, nucleus	34.2	30.0
KRH37006	Soybean	cytosol	19.4	28.61
KRH50756	Soybean	endoplasmic reticulum, nucleus	34.8	27.66
KRH70193	Soybean	cytosol, nucleus	27.4	27.35
KRH08536	Soybean	cytosol	26.6	26.55
KRH71329	Soybean	plastid	26.0	23.85
KRH32102	Soybean	plastid	25.6	23.49
KRH71332	Soybean	cytosol	5.2	20.97

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
MapMan:1.3.4.3	EntrezGene:100788043	MapMan:2.2.1.3	MapMan:2.3.4.3	Gene3D:3.30.390.30	Gene3D:3.50.50.60
MapMan:4.2.7.2.3	EMBL:ACUP02010305	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	EnsemblPlantsGene:GLYMA_17G037900
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004148	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660
GO:GO:0055114	UniProt:I1MRV6	InterPro:IPR016156	InterPro:IPR036188	EnsemblPlants:KRH02419	ProteinID:KRH02419
ProteinID:KRH02419.1	InterPro:Lipoamide_DH	PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350	PRINTS:PR00368
PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF151	MetaCyc:PWY-5046	MetaCyc:PWY-5084
InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	TIGRFAMs:TIGR01350
UniParc:UPI000233EC69	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:2801764..2804960

Molecular Weight (calculated)

52891.0 Da

IEP (calculated)

7.385

GRAVY (calculated)

0.022

Length

500 amino acids

Sequence
(BLAST)

001: MAMASLARRK GYAVVLSSRS SFCLTSWRGF ASGSDENDVV VIGGGPGGYV AAIKAAQLGL KTTCIEKRGT LGGTCLNVGC IPSKALLHSS HMYHEAKHAF
101: ANHGVKFSSV EVDLPAMMAQ KDKAVSNLTK GIEGLFKKNK VNYVKGYGKF VSPSEVSVDT TEGGNTVVKG KHIIIATGSD VKSLPGVTID EKKVVSSTGA
201: LALTEIPKRL VVIGAGYIGL EMGSVWGRLG TEITVVEFAS EIVPTMDAEV RKQFQRSLEK QGLKFKLKTK VVGVDTSGDG VKLTLEPAAG GDQTTLEADV
301: VLVSAGRTPF TAGLGLDKIG VETDKIGRIL VNERFATNVS GVYAIGDVIP GPMLAHKAEE DGVACVEYIA GKVGHVDYDK VPGVVYTMPE VASVGKTEEQ
401: VKELGVEYRV GKFPFMANSR AKAIDNAEGL VKILAEKETD KILGVHIMAP NAGELIHEAA IALQYDASSE DIARVCHAHP TMSEAVKEAA MATYDKPIHI

Best Arabidopsis Sequence Match ( AT3G17240.1 )
(BLAST)

001: MAMASLARRK AYFLTRNISN SPTDAFRFSF SLTRGFASSG SDDNDVVIIG GGPGGYVAAI KAAQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHVFANH GVKVSSVEVD LPAMLAQKDT AVKNLTRGVE GLFKKNKVNY VKGYGKFLSP SEVSVDTIDG ENVVVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL TEIPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAADIV PAMDGEIRKQ FQRSLEKQKM KFMLKTKVVG VDSSGDGVKL IVEPAEGGEQ
301: TTLEADVVLV SAGRTPFTSG LDLEKIGVET DKGGRILVNE RFSTNVSGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTYPEVAS
401: VGKTEEQLKK EGVSYNVGKF PFMANSRAKA IDTAEGMVKI LADKETDKIL GVHIMSPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EAIKEAAMAT
501: YDKPIHM

Arabidopsis Description

LPD2Dihydrolipoyl dehydrogenase 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M5K2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.