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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, endoplasmic reticulum

Predictor Summary:
  • plastid 8
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
 nucleus: 21132161
endoplasmic reticulum: 27224218
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH11978 Soybean endoplasmic reticulum, nucleus 87.89 88.67
KRH50756 Soybean endoplasmic reticulum, nucleus 96.14 87.12
VIT_05s0077g01210.t01 Wine grape plastid 86.32 86.16
PGSC0003DMT400069988 Potato cytosol 25.26 85.21
Os05t0156700-01 Rice plastid 34.39 84.12
CDY32221 Canola plastid 80.7 83.79
CDY34436 Canola plastid 80.53 83.76
Bra033540.1-P Field mustard plastid 82.11 83.13
AT4G16155.1 Thale cress plastid 82.11 82.54
KRH37006 Soybean cytosol 48.42 81.42
EES19070 Sorghum plastid 78.6 79.72
Os01t0337900-01 Rice plastid 78.25 79.5
PGSC0003DMT400069799 Potato mitochondrion, plastid 79.47 79.47
Solyc05g053100.2.1 Tomato nucleus 79.12 78.98
GSMUA_Achr3P12660_001 Banana plastid 78.42 78.84
KXG32441 Sorghum plastid 76.67 77.9
TraesCS1A01G099500.2 Wheat plastid 76.14 76.41
Zm00001d009779_P002 Maize plastid 77.72 75.73
CDX75895 Canola plastid 81.93 75.69
CDX82387 Canola plastid 81.93 75.57
Bra001645.1-P Field mustard plastid 81.75 75.4
AT3G16950.2 Thale cress plastid 81.4 74.48
TraesCS1D01G107400.1 Wheat plastid 76.84 74.36
TraesCS1B01G124900.1 Wheat plastid 76.67 74.19
HORVU1Hr1G023060.8 Barley plastid 75.79 74.1
Zm00001d009212_P004 Maize extracellular 77.02 71.5
Bra012738.1-P Field mustard peroxisome 24.21 66.35
CDX90541 Canola extracellular, nucleus, peroxisome 24.04 65.87
GSMUA_Achr1P18490_001 Banana plastid 32.63 65.49
CDY09711 Canola plasma membrane 42.98 64.64
KRH50629 Soybean mitochondrion 30.18 34.4
KRH02419 Soybean mitochondrion 30.0 34.2
KRH32102 Soybean plastid 27.02 28.26
KRH08536 Soybean cytosol 24.74 28.14
KRH71329 Soybean plastid 26.84 28.07
KRH70193 Soybean cytosol, nucleus 24.04 27.35
KRH71332 Soybean cytosol 5.09 23.39
CDX93023 Canola cytosol, mitochondrion 2.46 20.59
Protein Annotations
KEGG:00010+1.8.1.4KEGG:00020+1.8.1.4KEGG:00260+1.8.1.4KEGG:00280+1.8.1.4KEGG:00620+1.8.1.4KEGG:00640+1.8.1.4
EntrezGene:100782004Gene3D:3.30.390.30Gene3D:3.50.50.60MapMan:5.1.2.2.3EMBL:ACUP02010302InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_domInterPro:FAD/NAD-linked_Rdtase_dimer_sfEnsemblPlantsGene:GLYMA_17G032300GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0004148GO:GO:0005488GO:GO:0005575GO:GO:0005623GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009055GO:GO:0009987GO:GO:0016491GO:GO:0016668GO:GO:0019725
GO:GO:0022900GO:GO:0045454GO:GO:0050660GO:GO:0055114UniProt:I1MRP6InterPro:IPR016156
InterPro:IPR036188EnsemblPlants:KRH02332ProteinID:KRH02332ProteinID:KRH02332.1InterPro:Lipoamide_DHPFAM:PF02852
PFAM:PF07992PIRSF:PIRSF000350PRINTS:PR00368PRINTS:PR00411ScanProsite:PS00076PANTHER:PTHR22912
PANTHER:PTHR22912:SF196MetaCyc:PWY-5046MetaCyc:PWY-5084InterPro:Pyr_OxRdtase_I_ASInterPro:Pyr_nuc-diS_OxRdtaseInterPro:Pyr_nucl-diS_OxRdtase_dimer
SUPFAM:SSF51905SUPFAM:SSF55424TIGRFAMs:TIGR01350UniParc:UPI000196247DSEG:seg:
Description
hypothetical protein
Coordinates
chr17:-:2364162..2373012
Molecular Weight (calculated)
60240.4 Da
IEP (calculated)
7.455
GRAVY (calculated)
0.037
Length
570 amino acids
Sequence
(BLAST)
001: MHSSLSLSFS ATSSSVATVS RSRHSFHSPA AAMPLNLRFC GLRRDAFGSG LAASLNRYHS HLPRRPHSAA VSAALSSNGS PPKSFDYDLL IIGAGVGGHG
101: AALHAVEKGL KTAIVEGDVV GGTCVNRGCV PSKALLAVSG RMRELRSDHH LKSFGLQVSA AGYDRQGVAD HANNLASKIR NNLTNSMKAL GVDILTGFGT
201: ILGPQKVKVG SSDKIVTAKN IIIATGSVPF VPKGIEIDGK TVITSDHALK LESVPDWIAI VGSGYIGLEF SDVYTALGSE VTFIEALDQL MPGFDPEISK
301: LAQRVLINPR NIDYHTGVFA TKITPARDGK PVLIELIDAK TKEPKDTLEV DAALIATGRA PFTQGLGLEN IDVVTQRGFV PVDEHMRVID ANGKLVPHLY
401: CIGDANGKMM LAHAASAQGI SVVEQVTGKD HVLNHLSIPA ACFTHPELSM VGLTEPQARV KGEKEGFEVS VAKTSFKANT KALAENEGEG LAKLIYRPDN
501: GEILGVHIFG LHAADLIHEA SNAIALGTHI QDIKFAVHAH PTLSEVLDEL FKSAKVKAQA SSPVSEPVAV
Best Arabidopsis Sequence Match ( AT3G16950.1 )
(BLAST)
001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTVSEKVVV
Arabidopsis Description
LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.