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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX75895 Canola plastid 89.41 90.28
CDX82387 Canola plastid 89.09 89.81
Bra001645.1-P Field mustard plastid 88.76 89.48
AT4G16155.1 Thale cress plastid 80.74 88.71
Os05t0156700-01 Rice plastid 31.78 84.98
VIT_05s0077g01210.t01 Wine grape plastid 75.6 82.49
PGSC0003DMT400069988 Potato cytosol 22.15 81.66
KRH11978 Soybean endoplasmic reticulum, nucleus 74.0 81.59
Solyc01g100360.2.1 Tomato plastid 74.64 81.58
PGSC0003DMT400007182 Potato extracellular 74.64 81.58
KRH02332 Soybean endoplasmic reticulum, nucleus 74.48 81.4
Os01t0337900-01 Rice plastid 72.23 80.21
EES19070 Sorghum plastid 71.27 79.0
KXG32441 Sorghum plastid 70.95 78.79
TraesCS1A01G099500.2 Wheat plastid 70.31 77.11
Solyc05g053100.2.1 Tomato nucleus 70.63 77.06
PGSC0003DMT400069799 Potato mitochondrion, plastid 70.47 77.02
KRH50756 Soybean endoplasmic reticulum, nucleus 76.89 76.15
KRH37006 Soybean cytosol 41.41 76.11
Zm00001d009779_P002 Maize plastid 71.27 75.9
TraesCS1B01G124900.1 Wheat plastid 71.11 75.21
VIT_14s0060g01330.t01 Wine grape plastid 70.95 75.17
HORVU1Hr1G023060.8 Barley plastid 70.31 75.13
TraesCS1D01G107400.1 Wheat plastid 70.95 75.04
GSMUA_Achr3P12660_001 Banana plastid 68.22 74.96
VIT_14s0060g01410.t01 Wine grape cytosol 28.09 72.31
Zm00001d009212_P004 Maize extracellular 70.79 71.82
GSMUA_Achr1P18490_001 Banana plastid 28.89 63.38
AT3G17240.1 Thale cress mitochondrion 28.09 34.52
AT1G48030.3 Thale cress mitochondrion 28.09 34.52
AT3G54660.1 Thale cress plastid 25.04 27.61
AT3G24170.1 Thale cress cytosol 21.03 26.25
Protein Annotations
KEGG:00010+1.8.1.4KEGG:00020+1.8.1.4KEGG:00260+1.8.1.4KEGG:00280+1.8.1.4KEGG:00620+1.8.1.4KEGG:00640+1.8.1.4
Gene3D:3.30.390.30Gene3D:3.50.50.60MapMan:5.1.2.2.3EntrezGene:820951UniProt:A8MS68EMBL:AB026636
ProteinID:AEE75887.1ProteinID:AEE75888.1EMBL:AF228637EMBL:AK317007ArrayExpress:AT3G16950EnsemblPlantsGene:AT3G16950
RefSeq:AT3G16950TAIR:AT3G16950RefSeq:AT3G16950-TAIR-GEnsemblPlants:AT3G16950.2TAIR:AT3G16950.2EMBL:AY050376
EMBL:AY120695Unigene:At.16905InterPro:FAD/NAD-bd_sfInterPro:FAD/NAD-binding_domInterPro:FAD/NAD-linked_Rdtase_dimer_sfGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004148GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005730GO:GO:0005737GO:GO:0006086GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009941
GO:GO:0009987GO:GO:0016491GO:GO:0016668GO:GO:0019725GO:GO:0045454GO:GO:0046685
GO:GO:0050660GO:GO:0055114InterPro:IPR016156InterPro:IPR036188Symbol:LPD1InterPro:Lipoamide_DH
RefSeq:NP_001078165.1RefSeq:NP_566562.1PFAM:PF02852PFAM:PF07992PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001170
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009001
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052
PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281
PRINTS:PR00368PRINTS:PR00411ScanProsite:PS00076PANTHER:PTHR22912PANTHER:PTHR22912:SF196InterPro:Pyr_OxRdtase_I_AS
InterPro:Pyr_nucl-diS_OxRdtase_dimerSUPFAM:SSF51905SUPFAM:SSF55424TIGRFAMs:TIGR01350UniParc:UPI000150573FSEG:seg
Description
LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
Coordinates
chr3:-:5786385..5790525
Molecular Weight (calculated)
66665.1 Da
IEP (calculated)
8.671
GRAVY (calculated)
-0.088
Length
623 amino acids
Sequence
(BLAST)
001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTGDAKIKL NTNQEDRKGR RRGGDDEKQP SVSKDLKDIS
601: TRPSSFFENI SVGVLSLLSL IFV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.