Factsheet for PGSC0003DMT400007182

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100360.2.1	Tomato	plastid	99.47	99.47
CDY34436	Canola	plastid	81.93	85.22
PGSC0003DMT400069988	Potato	cytosol	25.26	85.21
CDY32221	Canola	plastid	81.93	85.06
Bra033540.1-P	Field mustard	plastid	83.16	84.19
AT4G16155.1	Thale cress	plastid	82.46	82.89
PGSC0003DMT400069799	Potato	mitochondrion, plastid	79.12	79.12
VIT_14s0060g01330.t01	Wine grape	plastid	79.47	77.04
CDX82387	Canola	plastid	81.23	74.92
Bra001645.1-P	Field mustard	plastid	81.23	74.92
CDX75895	Canola	plastid	81.05	74.88
AT3G16950.2	Thale cress	plastid	81.58	74.64
VIT_14s0060g01410.t01	Wine grape	cytosol	31.23	73.55
Bra012738.1-P	Field mustard	peroxisome	23.51	64.42
CDY09711	Canola	plasma membrane	42.63	64.12
CDX90541	Canola	extracellular, nucleus, peroxisome	23.16	63.46
PGSC0003DMT400069840	Potato	mitochondrion	31.05	35.4
PGSC0003DMT400011741	Potato	mitochondrion	30.35	34.33
PGSC0003DMT400076297	Potato	cytosol	19.12	28.39
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	26.67	27.34
CDX93023	Canola	cytosol, mitochondrion	2.46	20.59

Protein Annotations

EntrezGene:102602804	Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660
GO:GO:0055114	InterPro:IPR016156	InterPro:IPR036188	UniProt:M0ZSL5	PFAM:PF02852	PFAM:PF07992
EnsemblPlantsGene:PGSC0003DMG400002777	PGSC:PGSC0003DMG400002777	EnsemblPlants:PGSC0003DMT400007182	PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411
ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF196	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer
SUPFAM:SSF51905	SUPFAM:SSF55424	UniParc:UPI00029554B8	RefSeq:XP_006344750.1	SEG:seg	:

Description

Dihydrolipoyl dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400002777]

Coordinates

chr1:-:78063981..78071561

Molecular Weight (calculated)

60257.4 Da

IEP (calculated)

7.499

GRAVY (calculated)

0.011

Length

570 amino acids

Sequence
(BLAST)

001: MQSSISLSLS SPSTICRSDS SAAVSNANVN LLNPRSLRFC GLRREAFGLN SSLSTHRIQS LSNATRRPRS NRIVASSAGN GAASKGFDYD LVIIGAGVGG
101: HGAALHAVEK GLKTAIIEGD VVGGTCVNRG CVPSKALLAV SGRMRELQNE HHMKSFGLQV AAAGYDRQGV ADHANNLASK IRSNLTNSMK SLGVDILTGF
201: GTVLGPQKVK YGDTVITAKD IIIATGSVPL VPKGIEVDGK TVITSDHALK LEFVPQWIAI VGSGYIGLEF SDVYTALGSE VTFVEALDQL MPGFDPEIGK
301: LAQRVLINPR KIDYHTGVFA SKITPAKDGK PVTIELIDAK TKELKDTLEV DAALIATGRA PFTQGLGLEN INVQTQRGFV PVDSRMRVID ASGELVPHLY
401: CIGDANGKMM LAHAASAQGI SVVEQVTGKD HVLNHLSIPA ACFTHPEISM VGLTEPQARE KAEKEGFEIG IAKTSFKANT KALAENEGEG LAKLIYRPDS
501: GEILGVHIFG MHAADLIHEA SNAIALGTRI QDIKYAVHAH PTLSEVIDEL FKAAKVKANT SSPVAEPVAA

Best Arabidopsis Sequence Match ( AT4G16155.1 )
(BLAST)

001: MQSVLSLSFS QASLPLANRT LCSSNAAPST PRNLRFCGLR REAFCFSPSK QLTSCRFHIQ SRRIEVSAAA SSSAGNGAPS KSFDYDLIII GAGVGGHGAA
101: LHAVEKGLKT AIIEGDVVGG TCVNRGCVPS KALLAVSGRM RELQNEHHMK AFGLQVSAAG YDRQGVADHA SNLATKIRNN LTNSMKALGV DILTGFGAVL
201: GPQKVKYGDN IITGKDIIIA TGSVPFVPKG IEVDGKTVIT SDHALKLESV PDWIAIVGSG YIGLEFSDVY TALGSEVTFI EALDQLMPGF DPEISKLAQR
301: VLINTRKIDY HTGVFASKIT PAKDGKPVLI ELIDAKTKEP KDTLEVDAAL IATGRAPFTN GLGLENINVT TQRGFIPVDE RMRVIDGNGK LVPHLYCIGD
401: ANGKLMLAHA ASAQGISVVE QVTGRDHVLN HLSIPAACFT HPEISMVGLT EPQAREKAEK EGFKVSIAKT SFKANTKALA ENEGEGLAKM IYRPDNGEIL
501: GVHIFGLHAA DLIHEASNAI ALGTRIQDIK LAVHAHPTLS EVVDELFKAA KVDSPASVTA QSVKVTV

Arabidopsis Description

LPD2Dihydrolipoyl dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JLP5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.