Factsheet for PGSC0003DMT400011741

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400034833
PGSC0003DMT400042062

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17240.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT3G17240.1	PGSC0003DMT400042062	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099100.1.1	Tomato	plastid	99.21	99.21
PGSC0003DMT400069840	Potato	mitochondrion	91.07	91.8
VIT_05s0020g00380.t01	Wine grape	mitochondrion	85.71	86.06
KRH50629	Soybean	mitochondrion	85.12	85.8
KRH02419	Soybean	mitochondrion	85.12	85.8
GSMUA_Achr2P02040_001	Banana	mitochondrion	78.97	85.04
GSMUA_Achr11P...	Banana	mitochondrion	78.77	84.83
CDX95864	Canola	mitochondrion	84.13	83.79
Bra022204.1-P	Field mustard	mitochondrion	83.73	83.73
CDX92121	Canola	mitochondrion	83.53	83.53
CDY20935	Canola	mitochondrion	83.93	83.43
CDX93639	Canola	mitochondrion	83.53	83.04
Bra018700.1-P	Field mustard	mitochondrion	83.33	82.84
AT3G17240.1	Thale cress	mitochondrion	83.33	82.84
AT1G48030.3	Thale cress	mitochondrion	82.74	82.25
TraesCS1A01G105600.1	Wheat	mitochondrion	80.95	81.27
TraesCS1D01G109600.1	Wheat	mitochondrion	80.75	81.08
TraesCS1B01G131300.1	Wheat	mitochondrion	80.75	81.08
Zm00001d009163_P001	Maize	mitochondrion	80.16	80.96
EES02889	Sorghum	mitochondrion	80.56	80.56
Zm00001d040721_P002	Maize	mitochondrion	80.16	80.32
Os01t0328700-01	Rice	mitochondrion	79.76	79.92
TraesCS1A01G066400.1	Wheat	mitochondrion	78.77	78.93
TraesCS1B01G084700.1	Wheat	mitochondrion	78.37	78.53
TraesCS1D01G067500.1	Wheat	mitochondrion	78.57	78.42
EES17766	Sorghum	mitochondrion	77.38	78.0
HORVU1Hr1G013740.1	Barley	cytosol, mitochondrion	76.79	76.33
HORVU1Hr1G023630.1	Barley	cytosol, mitochondrion, plastid	80.16	74.13
PGSC0003DMT400069988	Potato	cytosol	10.91	32.54
PGSC0003DMT400069799	Potato	mitochondrion, plastid	34.33	30.35
PGSC0003DMT400007182	Potato	extracellular	34.33	30.35
PGSC0003DMT400076297	Potato	cytosol	21.83	28.65
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	25.79	23.38

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
MapMan:1.3.4.3	MapMan:2.2.1.3	MapMan:2.3.4.3	Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:4.2.7.2.3
ProteinID:AAG17888	ProteinID:AAG17888.1	EMBL:AF295339	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004148	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0034602	GO:GO:0045454
GO:GO:0050660	GO:GO:0055114	InterPro:IPR016156	InterPro:IPR036188	InterPro:Lipoamide_DH	UniProt:M1A028
PFAM:PF02852	PFAM:PF07992	EnsemblPlantsGene:PGSC0003DMG400004608	PGSC:PGSC0003DMG400004608	EnsemblPlants:PGSC0003DMT400011741	PIRSF:PIRSF000350
PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF151	InterPro:Pyr_OxRdtase_I_AS
InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	TIGRFAMs:TIGR01350	UniParc:UPI000294D831
SEG:seg	:	:	:	:	:

Description

Dihydrolipoyl dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400004608]

Coordinates

chr12:+:59873021..59877350

Molecular Weight (calculated)

53477.5 Da

IEP (calculated)

6.887

GRAVY (calculated)

0.016

Length

504 amino acids

Sequence
(BLAST)

001: MAISTLARRK ATTFLSSRFL YSTSKYSFSF TRGFASGSDE NDVVVIGGGP GGYVAAIKAA QLGLKTTCIE KRGTLGGTCL NVGCIPSKAL LHSSHMFHEA
101: QHSFANHGVK FSSVEVDLPA MMGQKDKAVS NLTRGIEGLF KKNKVNYVKG YGKFLSPSEI SVDTVEGGNS VVKGKNIIIA TGSDVKGLPG ITIDEKKIVS
201: STGALALTEI PKRLVVIGAG YIGLEMGSVW GRLGSEVTVV EFASDIVPTM DGEVRKQFQR ALEKQKMKFM LNTKVVSVDA TGDGVKLTLE PSAGGDQTIL
301: EADVVLVSAG RVPFTSGLGL DTIGVETDKA GRILVNERFA TNVPGVHAIG DVIPGPMLAH KAEEDGVACV EFIAGKEGHV DYDMVPGVVY THPEVAYVGK
401: TEEQVKSLGV DYRVGKFPFL ANSRAKAIDD AEGIVKVIAE KESDKILGVH IMSPNAGELI HEAVLALQYG ASSEDIARTC HAHPTMSEAL KEAAMATYDK
501: PIHM

Best Arabidopsis Sequence Match ( AT1G48030.4 )
(BLAST)

001: MAMASLARRK AYFLTRNLSN SPTDALRFSF SLSRGFASSG SDENDVVIIG GGPGGYVAAI KASQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHSFANH GIKVSSVEVD LPAMLAQKDN AVKNLTRGIE GLFKKNKVTY VKGYGKFISP NEVSVETIDG GNTIVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL SEVPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAGDIV PSMDGEIRKQ FQRSLEKQKM KFMLKTKVVS VDSSSDGVKL TVEPAEGGEQ
301: SILEADVVLV SAGRTPFTSG LDLEKIGVET DKAGRILVND RFLSNVPGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTHPEVAS
401: VGKTEEQLKK EGVSYRVGKF PFMANSRAKA IDNAEGLVKI LADKETDKIL GVHIMAPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EALKEAAMAT
501: YDKPIHI

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M5K3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.