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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 8
  • cytosol 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:cytosol, mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
 mitochondrion: 12746528
mitochondrion: 15276442
mitochondrion: 19010998
mitochondrion: 23027867
extracellular: 23159799
mitochondrion: 23356873
plasma membrane: 27800704
plastid: 27992503
msms PMID: 15276442 doi
BK Kristensen, P Askerlund, NV Bykova, H Egsgaard, IM Møller
Risø National Laboratory, Plant Research Department, P.O. Box 49, DK-4000 Roskilde, Denmark.
msms PMID: 23027867 doi
G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 12746528 doi
JL Heazlewood, KA Howell, J Whelan, AH Millar
Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Australia.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 19010998 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID: 23356873 doi
S Huang, RP Jacoby, RN Shingaki-Wells, L Li, AH Millar
ARC Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks (CABiN), The University of Western Australia, Bayliss Building M316, 35 Stirling Highway, Crawley, WA, 6009, Australia.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os03t0743500-02

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G17240.1 Os03t0743500-02 AT4G14640.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d009163_P001 Maize mitochondrion 92.64 93.39
EES02889 Sorghum mitochondrion 92.45 92.26
Zm00001d040721_P002 Maize mitochondrion 92.05 92.05
TraesCS1A01G066400.1 Wheat mitochondrion 90.46 90.46
TraesCS1B01G084700.1 Wheat mitochondrion 90.46 90.46
TraesCS1D01G067500.1 Wheat mitochondrion 90.66 90.3
HORVU1Hr1G013740.1 Barley cytosol, mitochondrion 87.87 87.18
GSMUA_Achr11P... Banana mitochondrion 78.73 84.62
GSMUA_Achr2P02040_001 Banana mitochondrion 77.34 83.12
Solyc05g053300.2.1 Tomato extracellular, mitochondrion, nucleus, plastid, unclear 81.71 82.2
PGSC0003DMT400069840 Potato mitochondrion 81.51 82.0
VIT_05s0020g00380.t01 Wine grape mitochondrion 80.91 81.08
PGSC0003DMT400011741 Potato mitochondrion 79.92 79.76
KRH02419 Soybean mitochondrion 78.93 79.4
KRH50629 Soybean mitochondrion 78.93 79.4
Solyc12g099100.1.1 Tomato plastid 79.52 79.37
AT1G48030.3 Thale cress mitochondrion 78.93 78.3
CDX93639 Canola mitochondrion 78.73 78.11
Bra022204.1-P Field mustard mitochondrion 78.13 77.98
Bra018700.1-P Field mustard mitochondrion 78.53 77.91
CDX92121 Canola mitochondrion 77.93 77.78
CDY20935 Canola mitochondrion 78.33 77.71
CDX95864 Canola mitochondrion 77.93 77.47
AT3G17240.1 Thale cress mitochondrion 77.14 76.53
Os05t0156700-01 Rice plastid 15.9 34.33
Os01t0337900-01 Rice plastid 34.19 30.66
Os02t0813500-01 Rice cytosol, plasma membrane 25.25 25.6
Os10t0415300-02 Rice plastid 27.44 24.91
Os03t0163300-01 Rice plastid 26.84 24.32
Protein Annotations
KEGG:00010+1.8.1.4KEGG:00020+1.8.1.4KEGG:00260+1.8.1.4KEGG:00280+1.8.1.4KEGG:00620+1.8.1.4KEGG:00640+1.8.1.4
MapMan:1.3.4.3MapMan:2.2.1.3MapMan:2.3.4.3Gene3D:3.30.390.30Gene3D:3.50.50.60MapMan:4.2.7.2.3
EntrezGene:4326980ProteinID:BAB39219.1ProteinID:BAF04832.1ProteinID:BAS71896.1ProteinID:EAZ11701.1InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_domInterPro:FAD/NAD-linked_Rdtase_dimer_sfGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003824
GO:GO:0004148GO:GO:0004518GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005623
GO:GO:0006091GO:GO:0006139GO:GO:0006259GO:GO:0006260GO:GO:0008026GO:GO:0008150
GO:GO:0008152GO:GO:0008375GO:GO:0008408GO:GO:0009055GO:GO:0009056GO:GO:0009058
GO:GO:0009987GO:GO:0016020GO:GO:0016491GO:GO:0016668GO:GO:0016740GO:GO:0016746
GO:GO:0016787GO:GO:0016818GO:GO:0019538GO:GO:0019725GO:GO:0022900GO:GO:0030163
GO:GO:0045454GO:GO:0050660GO:GO:0055114GO:GO:0090305InterPro:IPR016156InterPro:IPR036188
InterPro:Lipoamide_DHEnsemblPlantsGene:Os01g0328700EnsemblPlants:Os01t0328700-01PFAM:PF02852PFAM:PF07992PIRSF:PIRSF000350
PRINTS:PR00368PRINTS:PR00411ScanProsite:PS00076PANTHER:PTHR22912PANTHER:PTHR22912:SF151InterPro:Pyr_OxRdtase_I_AS
InterPro:Pyr_nuc-diS_OxRdtaseInterPro:Pyr_nucl-diS_OxRdtase_dimerUniProt:Q9ASP4SUPFAM:SSF51905SUPFAM:SSF55424TIGRFAMs:TIGR01350
UniParc:UPI00000A397BRefSeq:XP_015611017.1SEG:seg:::
Description
FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain containing protein. (Os01t0328700-01)
Coordinates
chr1:-:12655016..12658349
Molecular Weight (calculated)
52646.1 Da
IEP (calculated)
7.609
GRAVY (calculated)
0.125
Length
503 amino acids
Sequence
(BLAST)
001: MALAILARRR AAEALLRRPL GAAGVSALRA SYAAVAGEES DVVVVGGGPG GYVAAIKAAQ LGLKTTCIEK RGTLGGTCLN VGCIPSKALL HSSHMYHEAK
101: SSFAHHGVKF SNLEVDLPAM MAQKDKAVAG LTKGIEGLFK KNKVTYVKGF GKLASPSEVS VDLSDGGSTV VKGKNIIIAT GSDVKSLPGV TIDEKKIVSS
201: TGALCLSEIP KKLVVIGAGY IGLEMGSVWN RLGSEVTVVE FAPDIVPSMD GEVRKQFQRM LEKQKMKFML KTKVVGVDTS GDGVKLTLEP AAGGEQSVIE
301: ADIVLVSAGR VPYTAGIGLE SVGVETDKAG RILVDKRFMT NVNGVYAIGD AIPGPMLAHK AEEDGVACVE FIAGKEGHVD YDTVPGVVYT HPEVASVGKT
401: EEQVKALGIP YRVGKFPLLA NSRAKAIDDA EGLVKVVAEK ETDKILGVHI MAPGAGEIIH EAVLALQYGA SSEDIARTCH AHPTVSEALK EACLQTFTKA
501: IHI
Best Arabidopsis Sequence Match ( AT1G48030.4 )
(BLAST)
001: MAMASLARRK AYFLTRNLSN SPTDALRFSF SLSRGFASSG SDENDVVIIG GGPGGYVAAI KASQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHSFANH GIKVSSVEVD LPAMLAQKDN AVKNLTRGIE GLFKKNKVTY VKGYGKFISP NEVSVETIDG GNTIVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL SEVPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAGDIV PSMDGEIRKQ FQRSLEKQKM KFMLKTKVVS VDSSSDGVKL TVEPAEGGEQ
301: SILEADVVLV SAGRTPFTSG LDLEKIGVET DKAGRILVND RFLSNVPGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTHPEVAS
401: VGKTEEQLKK EGVSYRVGKF PFMANSRAKA IDNAEGLVKI LADKETDKIL GVHIMAPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EALKEAAMAT
501: YDKPIHI
Arabidopsis Description
LPD1Dihydrolipoyl dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M5K3]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.