Factsheet for TraesCS1B01G084700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G382800.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17240.1	TraesCS5A01G382800.2	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G066400.1	Wheat	mitochondrion	99.6	99.6
TraesCS1D01G067500.1	Wheat	mitochondrion	99.8	99.41
HORVU1Hr1G013740.1	Barley	cytosol, mitochondrion	95.63	94.87
Zm00001d009163_P001	Maize	mitochondrion	90.66	91.38
EES02889	Sorghum	mitochondrion	90.66	90.48
Os01t0328700-01	Rice	mitochondrion	90.46	90.46
Zm00001d040721_P002	Maize	mitochondrion	90.06	90.06
TraesCS1B01G131300.1	Wheat	mitochondrion	87.28	87.45
GSMUA_Achr11P...	Banana	mitochondrion	78.13	83.97
GSMUA_Achr2P02040_001	Banana	mitochondrion	77.14	82.91
PGSC0003DMT400069840	Potato	mitochondrion	80.12	80.6
Solyc05g053300.2.1	Tomato	extracellular, mitochondrion, nucleus, plastid, unclear	80.12	80.6
VIT_05s0020g00380.t01	Wine grape	mitochondrion	80.12	80.28
KRH02419	Soybean	mitochondrion	78.33	78.8
KRH50629	Soybean	mitochondrion	78.13	78.6
PGSC0003DMT400011741	Potato	mitochondrion	78.53	78.37
Solyc12g099100.1.1	Tomato	plastid	78.33	78.17
AT1G48030.3	Thale cress	mitochondrion	78.73	78.11
CDX93639	Canola	mitochondrion	78.73	78.11
Bra018700.1-P	Field mustard	mitochondrion	78.53	77.91
CDY20935	Canola	mitochondrion	78.33	77.71
Bra022204.1-P	Field mustard	mitochondrion	77.73	77.58
CDX92121	Canola	mitochondrion	77.53	77.38
CDX95864	Canola	mitochondrion	77.53	77.08
AT3G17240.1	Thale cress	mitochondrion	77.53	76.92
TraesCS1B01G124900.1	Wheat	plastid	34.0	29.03
TraesCS6B01G423100.1	Wheat	cytosol	24.85	25.15
TraesCS4B01G278900.1	Wheat	plastid	26.24	24.0
TraesCS6B01G423000.1	Wheat	cytosol	21.87	21.91

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
MapMan:1.3.4.3	MapMan:2.2.1.3	MapMan:2.3.4.3	Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:4.2.7.2.3
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004148	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114
InterPro:IPR016156	InterPro:IPR036188	InterPro:Lipoamide_DH	PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350
PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF151	InterPro:Pyr_OxRdtase_I_AS
InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	TIGRFAMs:TIGR01350	EnsemblPlantsGene:TraesCS1B01G084700
EnsemblPlants:TraesCS1B01G084700.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:69540203..69543290

Molecular Weight (calculated)

52798.4 Da

IEP (calculated)

8.089

GRAVY (calculated)

0.099

Length

503 amino acids

Sequence
(BLAST)

001: MALAILARRR AAEAVARRAH APGAAALSAW RAYAAAAEES DVVVVGGGPG GYVAAIKAAQ LGLKTTCIEK RGTLGGTCLN VGCIPSKALL HSSHMYHEAK
101: TSFAHHGVKI SNLEVDLPAM MAQKDKAVAG LTKGIEGLFK KNKVTYVKGF GKLTSPSEVS VDLVDGGNTV VKGKNIIIAT GSDVKSLPGI TIDEKKIVSS
201: TGALCLSGIP KKMVVIGAGY IGLEMGSVWN RLGTEVTVVE FAPDIVPSMD GEIRKQFQRM LQKQKMKFML KTKVVGVDTS GDGVKLTLEP ATGGEQSILE
301: ADIVLVSAGR TPYTAGLGLD AIGVEMDKAG RILVDKRFMT NVSGVYAIGD AIPGPMLAHK AEEDGVACVE FLAGKEGHVD YDLVPGVVYT HPEVASVGKT
401: EEQVKASGIA YRVGKFPLMA NSRAKAIDDA EGMVKVVADK ETDKILGVHI MAQNAGEIIH EAVLALQYGA SSEDVARICH AHPTVSEALK EACLQTHSKA
501: IHI

Best Arabidopsis Sequence Match ( AT1G48030.4 )
(BLAST)

001: MAMASLARRK AYFLTRNLSN SPTDALRFSF SLSRGFASSG SDENDVVIIG GGPGGYVAAI KASQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHSFANH GIKVSSVEVD LPAMLAQKDN AVKNLTRGIE GLFKKNKVTY VKGYGKFISP NEVSVETIDG GNTIVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL SEVPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAGDIV PSMDGEIRKQ FQRSLEKQKM KFMLKTKVVS VDSSSDGVKL TVEPAEGGEQ
301: SILEADVVLV SAGRTPFTSG LDLEKIGVET DKAGRILVND RFLSNVPGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTHPEVAS
401: VGKTEEQLKK EGVSYRVGKF PFMANSRAKA IDNAEGLVKI LADKETDKIL GVHIMAPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EALKEAAMAT
501: YDKPIHI

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M5K3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.