Factsheet for Solyc05g053300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, mitochondrion, unclear, plastid, nucleus

Predictor Summary:

mitochondrion 10
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g005240.1.1
Solyc06g053930.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17240.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT3G17240.1	Solyc06g053930.2.1	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069840	Potato	mitochondrion	99.4	99.4
Solyc12g099100.1.1	Tomato	plastid	92.0	91.27
VIT_05s0020g00380.t01	Wine grape	mitochondrion	87.8	87.45
KRH02419	Soybean	mitochondrion	86.0	86.0
KRH50629	Soybean	mitochondrion	85.6	85.6
GSMUA_Achr2P02040_001	Banana	mitochondrion	80.0	85.47
GSMUA_Achr11P...	Banana	mitochondrion	79.6	85.04
CDX95864	Canola	mitochondrion	86.0	84.98
CDX92121	Canola	mitochondrion	85.6	84.92
Bra022204.1-P	Field mustard	mitochondrion	85.6	84.92
AT1G48030.3	Thale cress	mitochondrion	85.6	84.42
CDX93639	Canola	mitochondrion	85.4	84.22
CDY20935	Canola	mitochondrion	85.2	84.02
Bra018700.1-P	Field mustard	mitochondrion	85.2	84.02
AT3G17240.1	Thale cress	mitochondrion	85.2	84.02
TraesCS1A01G105600.1	Wheat	mitochondrion	83.4	83.07
TraesCS1D01G109600.1	Wheat	mitochondrion	83.2	82.87
TraesCS1B01G131300.1	Wheat	mitochondrion	83.2	82.87
Zm00001d009163_P001	Maize	mitochondrion	81.8	81.96
Zm00001d040721_P002	Maize	mitochondrion	82.2	81.71
Os01t0328700-01	Rice	mitochondrion	82.2	81.71
EES02889	Sorghum	mitochondrion	82.0	81.35
TraesCS1A01G066400.1	Wheat	mitochondrion	80.6	80.12
TraesCS1B01G084700.1	Wheat	mitochondrion	80.6	80.12
TraesCS1D01G067500.1	Wheat	mitochondrion	80.8	80.0
EES17766	Sorghum	mitochondrion	79.4	79.4
HORVU1Hr1G013740.1	Barley	cytosol, mitochondrion	79.4	78.3
HORVU1Hr1G023630.1	Barley	cytosol, mitochondrion, plastid	82.6	75.78
Solyc01g100360.2.1	Tomato	plastid	35.4	31.05
Solyc05g053100.2.1	Tomato	nucleus	35.2	30.82
Solyc09g091840.2.1	Tomato	extracellular	24.2	26.65
Solyc09g065900.2.1	Tomato	plastid	26.0	23.34

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
MapMan:1.3.4.3	MapMan:2.2.1.3	MapMan:2.3.4.3	Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:4.2.7.2.3
EMBL:AF542182	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004148	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114	InterPro:IPR016156
InterPro:IPR036188	InterPro:Lipoamide_DH	PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350	PRINTS:PR00368
PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF151	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase
InterPro:Pyr_nucl-diS_OxRdtase_dimer	UniProt:Q8GT30	SUPFAM:SSF51905	SUPFAM:SSF55424	EnsemblPlantsGene:Solyc05g053300.2	EnsemblPlants:Solyc05g053300.2.1
TIGRFAMs:TIGR01350	UniParc:UPI00000AE3BE	SEG:seg	:	:	:

Description

Dihydrolipoyl dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q8GT30]

Coordinates

chr5:+:63426197..63431274

Molecular Weight (calculated)

52813.9 Da

IEP (calculated)

7.385

GRAVY (calculated)

0.037

Length

500 amino acids

Sequence
(BLAST)

001: MAIGSLARRK ASTILSSRYL KYSFSLSRGF ASGSDENDVV VIGGGPGGYV AAIKAAQLGL KTTCIEKRGT LGGTCLNVGC IPSKALLHSS HMYHEAQHSF
101: ASHGVKFSSV EVDLPAMMAQ KDKAVAGLTR GIEGLFKKNK VNYVKGYGKF LSPSEVSVDT VEGGNTIVKG KNIIIATGSD VKSLPGLTID EKRIVSSTGA
201: LALTEIPKKL VVIGAGYIGL EMGSVWGRLG SEVTVVEFAS DIVPTMDGEV RKQFQRSLEK QKMKFMLKTK VVSVDTVGDS VKLTLEPAAG GEQTTLEADV
301: VLVSAGRVPF TSGLGLDKIG VETDKAGRIL VNERFASNVP GVYAIGDVIP GPMLAHKAEE DGVACVEFIA GKEGHVDYDL VPGVCYTHPE VASVGKTEEQ
401: VKALGVDYRV GKFPFLANSR AKAIDDAEGI VKVIAEKGTD KILGVHIMSS NAGELIHEAV LALNYGASSE DIARTCHAHP TMSEALKEAA MATYDKPIHM

Best Arabidopsis Sequence Match ( AT1G48030.4 )
(BLAST)

001: MAMASLARRK AYFLTRNLSN SPTDALRFSF SLSRGFASSG SDENDVVIIG GGPGGYVAAI KASQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHSFANH GIKVSSVEVD LPAMLAQKDN AVKNLTRGIE GLFKKNKVTY VKGYGKFISP NEVSVETIDG GNTIVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL SEVPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAGDIV PSMDGEIRKQ FQRSLEKQKM KFMLKTKVVS VDSSSDGVKL TVEPAEGGEQ
301: SILEADVVLV SAGRTPFTSG LDLEKIGVET DKAGRILVND RFLSNVPGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTHPEVAS
401: VGKTEEQLKK EGVSYRVGKF PFMANSRAKA IDNAEGLVKI LADKETDKIL GVHIMAPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EALKEAAMAT
501: YDKPIHI

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M5K3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.