Factsheet for TraesCS1A01G105600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

mitochondrion: 21043471
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G382800.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17240.1	TraesCS5A01G382800.2	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G109600.1	Wheat	mitochondrion	99.8	99.8
TraesCS1B01G131300.1	Wheat	mitochondrion	99.8	99.8
HORVU1Hr1G023630.1	Barley	cytosol, mitochondrion, plastid	98.61	90.83
EES17766	Sorghum	mitochondrion	88.65	89.0
TraesCS1A01G066400.1	Wheat	mitochondrion	87.65	87.48
GSMUA_Achr11P...	Banana	mitochondrion	79.08	84.83
GSMUA_Achr2P02040_001	Banana	mitochondrion	78.49	84.19
Solyc05g053300.2.1	Tomato	extracellular, mitochondrion, nucleus, plastid, unclear	83.07	83.4
PGSC0003DMT400069840	Potato	mitochondrion	83.07	83.4
VIT_05s0020g00380.t01	Wine grape	mitochondrion	81.08	81.08
PGSC0003DMT400011741	Potato	mitochondrion	81.27	80.95
Solyc12g099100.1.1	Tomato	plastid	80.88	80.56
KRH02419	Soybean	mitochondrion	80.08	80.4
KRH50629	Soybean	mitochondrion	79.88	80.2
CDX92121	Canola	mitochondrion	80.08	79.76
Bra022204.1-P	Field mustard	mitochondrion	80.08	79.76
CDX95864	Canola	mitochondrion	80.28	79.64
AT3G17240.1	Thale cress	mitochondrion	80.28	79.49
CDX93639	Canola	mitochondrion	79.88	79.09
Bra018700.1-P	Field mustard	mitochondrion	79.68	78.9
AT1G48030.3	Thale cress	mitochondrion	79.48	78.7
CDY20935	Canola	mitochondrion	79.48	78.7
TraesCS1A01G099500.2	Wheat	plastid	34.66	30.63
TraesCS6A01G383800.1	Wheat	cytosol	25.1	25.05
TraesCS4A01G025200.1	Wheat	golgi	26.49	24.18

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
MapMan:1.3.4.3	MapMan:2.2.1.3	MapMan:2.3.4.3	Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:4.2.7.2.3
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004148	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114
InterPro:IPR016156	InterPro:IPR036188	InterPro:Lipoamide_DH	PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350
PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF151	InterPro:Pyr_OxRdtase_I_AS
InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	TIGRFAMs:TIGR01350	EnsemblPlantsGene:TraesCS1A01G105600
EnsemblPlants:TraesCS1A01G105600.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:101764234..101767627

Molecular Weight (calculated)

52739.9 Da

IEP (calculated)

7.195

GRAVY (calculated)

0.065

Length

502 amino acids

Sequence
(BLAST)

001: MAMASLARRR AAEAVLLRRP HAAAWASACR GYAASGEESD VVVIGGGPGG YVAAIKAAQL GLKTTCIEKR GALGGTCLNV GCIPSKALLH SSHMYHEAKS
101: SFAHHGVKFS NLEVDLPAMM AQKDKAVSGL TKGIEGLFKK NKVEYVKGFG KLVSPSEVSV DLVDGGSTIV KGKNIIVATG SDVKSLPGVT IDEKKIVSST
201: GALALTEIPK KLVVIGAGYI GLEMGSVWNR LGSEVTVVEF APDIVPSMDG EIRKQFQRML EKQKFKFMLK TKVVGVDTSG SGVKLTVEPA AGGEQTVIEA
301: DVVLVSAGRV PYTAGIGLDA IGVETDKGGR ILVDNRFMTN VKGVYAIGDA IPGPMLAHKA EEDGVACVEF IAGKEGHVDY DTVPGVVYTH PEVASVGKTE
401: EQVKASGVAY QVGKFPLLAN SRAKAIDDAE GMVKVISEKE TDRILGVHIM SPGAGEIIHE AVLALQYGAS SEDIARTCHA HPTVSEALKE ACMNTYDKAI
501: HM

Best Arabidopsis Sequence Match ( AT1G48030.4 )
(BLAST)

001: MAMASLARRK AYFLTRNLSN SPTDALRFSF SLSRGFASSG SDENDVVIIG GGPGGYVAAI KASQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHSFANH GIKVSSVEVD LPAMLAQKDN AVKNLTRGIE GLFKKNKVTY VKGYGKFISP NEVSVETIDG GNTIVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL SEVPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAGDIV PSMDGEIRKQ FQRSLEKQKM KFMLKTKVVS VDSSSDGVKL TVEPAEGGEQ
301: SILEADVVLV SAGRTPFTSG LDLEKIGVET DKAGRILVND RFLSNVPGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTHPEVAS
401: VGKTEEQLKK EGVSYRVGKF PFMANSRAKA IDNAEGLVKI LADKETDKIL GVHIMAPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EALKEAAMAT
501: YDKPIHI

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M5K3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.