Factsheet for Solyc09g065900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g047300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54660.1	Solyc10g047300.1.1	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	96.41	96.58
KRH32102	Soybean	plastid	78.64	80.37
KRH71329	Soybean	plastid	78.46	80.18
VIT_07s0141g00390.t01	Wine grape	plastid	80.07	79.79
AT3G54660.1	Thale cress	plastid	77.38	76.28
CDY69892	Canola	plastid	75.76	75.09
CDX73461	Canola	plastid	75.58	75.04
Bra007087.1-P	Field mustard	plastid	75.58	74.78
GSMUA_Achr3P29340_001	Banana	plastid	72.71	72.45
Zm00001d027769_P001	Maize	plastid	71.1	72.0
TraesCS4D01G277400.1	Wheat	golgi	71.1	71.74
EER95455	Sorghum	plastid	70.56	71.45
TraesCS4A01G025200.1	Wheat	golgi	70.56	71.45
TraesCS4B01G278900.1	Wheat	plastid	70.38	71.27
Os03t0163300-01	Rice	plastid	70.74	70.99
CDY13217	Canola	plastid	74.33	68.77
CDX76141	Canola	plastid	73.07	67.27
CDX94793	Canola	endoplasmic reticulum	20.11	67.07
Bra014801.1-P	Field mustard	plastid	73.97	66.99
Os10t0415300-02	Rice	plastid	66.07	66.43
HORVU4Hr1G073930.1	Barley	mitochondrion, plastid	70.02	66.1
KRH71332	Soybean	cytosol	14.54	65.32
OQU91783	Sorghum	plastid	61.4	64.41
GSMUA_Achr9P21540_001	Banana	cytosol	15.8	55.0
Solyc09g091840.2.1	Tomato	extracellular	42.19	51.76
Solyc01g100360.2.1	Tomato	plastid	27.47	26.84
Solyc05g053100.2.1	Tomato	nucleus	27.29	26.62
Solyc05g053300.2.1	Tomato	extracellular, mitochondrion, nucleus, plastid, unclear	23.34	26.0
Solyc12g099100.1.1	Tomato	plastid	23.16	25.6

Protein Annotations

KEGG:00480+1.8.1.7	MapMan:10.4.1.4	Gene3D:3.30.390.30	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0000305	GO:GO:0003674	GO:GO:0003824	GO:GO:0004362
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006091	GO:GO:0006749	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	GO:GO:0098869
InterPro:Glut-diS_reduct	InterPro:IPR016156	InterPro:IPR036188	UniProt:K4CUL6	PFAM:PF02852	PFAM:PF07992
PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR43256	PANTHER:PTHR43256:SF4
InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	EnsemblPlantsGene:Solyc09g065900.2
EnsemblPlants:Solyc09g065900.2.1	TIGRFAMs:TIGR01424	UniParc:UPI000276CB39	SEG:seg	:	:

Description

Glutathione reductase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G54660) UniProtKB/Swiss-Prot;Acc:P42770]

Coordinates

chr9:-:64195249..64200438

Molecular Weight (calculated)

60091.6 Da

IEP (calculated)

7.843

GRAVY (calculated)

-0.161

Length

557 amino acids

Sequence
(BLAST)

001: MATSLSSPKL STTLSSPTFH SLYKTKFSNF SLLSLSNPIK PLRFNFLSHT RTSSLSYGRR FTTPRAESSN GAETPRHYDF DLFTIGAGSG GVRASRFASN
101: FGASVAVCEL PFSTISSDST GGVGGTCVLR GCVPKKLLVY ASKYSHEFEE SCGFGWNYEA EPKHDWSTLI ANKNAELQRL TGIYKNILKN ADVTLIEGRG
201: KVVDPHTVDV DGKLYSAKNI LISVGGRPFI PDIPGSEYAI DSDAALDLPT KPDKIAIVGG GYIALEFAGI FNGLKSEVHV FIRQKKVLRG FDEEIRDFVG
301: EQMSLRGIEF HTEESPQAIV KSADGSLSIK TNRGTVEGFS HIMFATGRSP NTKNLGLDTV GVKMTKNGAI EVDEYSRTSV PSIWAVGDVT DRINLTPVAL
401: MEGGALAKTI FAGEPTKPDY RNVPCAVFSQ PPIGLVGLTE EEAIKEYGDV DVYTANFRPL KATLSGLPDR VFMKLVVCAK SSKVLGLHMC GDDAPEIVQG
501: FAVAVKAGLT KADFDTTVGI HPTAAEEFVT MRTPTRKIRS SPSEGKAEHD SKAAARV

Best Arabidopsis Sequence Match ( AT3G54660.1 )
(BLAST)

001: MASTPKLTST ISSSSPSLQF LCKKLPIAIH LPSSSSSSFL SLPKTLTSLY SLRPRIALLS NHRYYHSRRF SVCASTDNGA ESDRHYDFDL FTIGAGSGGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV

Arabidopsis Description

EMB2360At3g54660 [Source:UniProtKB/TrEMBL;Acc:Q5FV38]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.