Factsheet for Solyc10g047300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
extracellular 3
endoplasmic reticulum 5
vacuole 3
plasma membrane 3
golgi 3
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

plastid: 20363867
nucleus: 25464976

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g007710.2.1
Solyc06g082800.2.1
Solyc09g065900.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09420.1	Solyc06g007710.2.1	AT3G20000.1	17981999
AT5G09420.1	Solyc06g082800.2.1	AT3G20000.1	17981999
AT5G09420.1	Solyc09g065900.2.1	AT3G54660.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	52.84	94.89
VIT_12s0028g00300.t01	Wine grape	cytosol	70.9	69.85
KRH43896	Soybean	cytosol, endoplasmic reticulum	67.73	67.73
KRH10544	Soybean	golgi	67.56	67.56
KRH58264	Soybean	golgi, plasma membrane	35.79	66.05
KRH58262	Soybean	cytosol	30.6	65.83
AT5G09420.1	Thale cress	cytosol	63.88	63.35
CDY21581	Canola	cytosol	63.04	62.52
GSMUA_Achr9P14860_001	Banana	mitochondrion	62.71	60.19
TraesCS6A01G318800.1	Wheat	plastid	57.53	56.49
TraesCS6B01G349000.1	Wheat	plastid	57.19	56.16
TraesCS6D01G298000.1	Wheat	plastid	57.19	56.16
KXG30729	Sorghum	plastid	57.36	55.86
Os02t0754500-01	Rice	cytosol, mitochondrion, plastid	56.52	55.14
Zm00001d018098_P005	Maize	plasma membrane	56.35	54.89
Solyc03g118690.2.1	Tomato	plastid	50.67	51.36
HORVU6Hr1G078210.1	Barley	mitochondrion	47.49	50.9
Solyc10g086170.1.1	Tomato	cytosol	32.11	45.07
Bra009383.1-P	Field mustard	cytosol, plastid	63.38	41.06
Solyc10g007840.2.1	Tomato	plastid	17.06	19.28
Solyc01g106330.2.1	Tomato	cytosol	17.89	17.31
Solyc01g106360.2.1	Tomato	plastid	17.56	17.27
Solyc01g106340.2.1	Tomato	cytosol, golgi, plasma membrane	17.56	17.21
Solyc01g106350.2.1	Tomato	cytosol	17.06	17.0
Solyc06g068690.2.1	Tomato	extracellular	14.88	15.29
Solyc03g118030.2.1	Tomato	plastid	13.88	13.3
Solyc12g070080.1.1	Tomato	cytosol, plastid	2.34	9.4
Solyc12g070090.1.1	Tomato	cytosol	3.18	8.8

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:1.25.40.10	MapMan:23.2.1.7	Gene3D:3.90.1300.10	InterPro:AS_sf	InterPro:Amidase
InterPro:Amidase_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	InterPro:IPR036928	UniProt:K4CZZ3	PFAM:PF00515	PFAM:PF01425	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR11895	PANTHER:PTHR11895:SF92	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF75304
EnsemblPlantsGene:Solyc10g047300.1	EnsemblPlants:Solyc10g047300.1.1	TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1
InterPro:TPR_repeat	UniParc:UPI0002769BDE	SEG:seg	:	:	:

Description

Outer envelope protein 64, mitochondrial [Source:Projected from Arabidopsis thaliana (AT5G09420) UniProtKB/Swiss-Prot;Acc:F4KCL7]

Coordinates

chr10:+:40482669..40501656

Molecular Weight (calculated)

65600.4 Da

IEP (calculated)

9.496

GRAVY (calculated)

-0.088

Length

598 amino acids

Sequence
(BLAST)

001: MTKLNVSNPK VWVVIGVGFA GILIMAEVNR RRLKARNSIK QDFGAFIERI ELLPFPQPPP PAARLSLSGL SFAIKDNIDV KEYVTGFGSP AWKQTHEAAT
101: KTAIVVTALL KNGSTCVGKT IMDEFGLGIT GENVHYGTPT NPKLPSHIPG GSSSGSAVAV AAELVDFALG TDMTGCIRVP AAFCGVFGFR PSHRAISTVG
201: VLPVSQSLDS IGWLARDPSV LHRVGHVLLQ IPSIEPKRTR CFVIADDLFQ LCNVPKQKTV YVVTKVIEKL SGYQAPKHLN LGQYIASNVP SLKGFIEQST
301: IQQNGMSTLR ALSSVMFLLQ RYEFNTNYEE WMKAVKPRLG SQVTNHIAAA DTLAPENIKV LYKVRTEMRV AMQNLLKNDG ILVLPTVADP PLKLKSRKGL
401: YAEVHDRAFA LLGIASMSGC CQAAIPFGEH ENYPISLSFI ASHGTDKFLL DTVLDMYSSI QNEVSIQSSA SPLPDTNGSI DASELLKEKG NAAYKGKQWN
501: KAVSYYTEAI KLNDNATYYS NRAAAYLELG CFHQAEEDCT KAISLDKKNV KAYMRRGTAR ESLLFYKEAL QDIRHALVLE PQNKYASVSE KRLRKLIS

Best Arabidopsis Sequence Match ( AT5G09420.1 )
(BLAST)

001: MSNTLSLIQS NASNPKVWVV IGVTVAGIVI LAETRKRRIR ALREEDFGAF LDRFELLPFP PPPPPAAKQS LSGLTFSISD AFDVKDYITG FGCPQWKKTH
101: EAAEKTAVVV TTLLKNGATC VGKTIMDELG FGIIGENKHY GTPINPLMPD NVPGGCSSGS AVSVGAELVD FSLGIDTTGG VRVPAAFCGI LGFRPSQGTV
201: SSVGVLPNSQ SLETVGWFAS DPSVLCQVGH ALLNLSAVTH RRQRSLIFAD DLFELSDIPK QKSVQVVRKA IENLSGYKTP KHVNVGQYVA SNVPSLAEFC
301: EQSGKSQNSA STLRALSSVM LAIQRHEFKT NHEEWWQTCK SFLGPRFSND VVTALKSKNE SIKSLYRVKN EMRATIQSLL KEDGILVIPT VADPPPRLNT
401: KRNKSLNEFL DRTYALSCIA SMSGCCQVTI PLGEHGDRPI SVSLLTYYGG DKFLLDTTLD VYASLQDQAK LASNLAPVSD TNGNMEASEV MKEKGNAAYK
501: GKQWNKAVNF YTEAIKLNGA NATYYCNRAA AFLELCCFQQ AEQDCTKAML IDKKNVKAYL RRGTARESLV RYKEAAADFR HALVLEPQNK TAKVAEKRLR
601: KHI

Arabidopsis Description

OM64Outer envelope protein 64, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4KCL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.