Factsheet for Solyc06g068690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

extracellular: 22364583

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118030.2.1	Tomato	plastid	76.46	71.31
VIT_15s0024g00980.t01	Wine grape	cytosol	65.98	70.46
VIT_00s0283g00010.t01	Wine grape	mitochondrion	20.27	68.6
KRH41039	Soybean	mitochondrion	56.87	67.83
VIT_15s0024g01020.t01	Wine grape	cytosol	65.46	67.08
VIT_15s0024g01010.t01	Wine grape	endoplasmic reticulum, golgi	69.42	64.64
KRH59711	Soybean	plasma membrane	67.87	63.81
CDX98979	Canola	plastid	67.87	60.86
Bra009269.1-P	Field mustard	plastid	67.53	60.74
CDX70030	Canola	plastid	67.53	60.74
TraesCS3B01G379500.5	Wheat	golgi, vacuole	65.29	59.65
TraesCS3A01G347600.4	Wheat	endoplasmic reticulum, golgi	64.95	59.34
KXG28572	Sorghum	golgi	67.18	59.33
Zm00001d052660_P002	Maize	mitochondrion	66.67	59.06
AT5G07360.1	Thale cress	plastid	66.84	59.03
TraesCS3D01G341200.1	Wheat	mitochondrion, vacuole	64.95	58.97
HORVU3Hr1G088210.5	Barley	endoplasmic reticulum, golgi	64.95	56.84
Os11t0536800-01	Rice	golgi, plastid	65.29	56.8
Solyc10g007840.2.1	Tomato	plastid	18.9	20.79
Solyc01g106330.2.1	Tomato	cytosol	19.93	18.77
Solyc01g106350.2.1	Tomato	cytosol	19.07	18.5
Solyc01g106340.2.1	Tomato	cytosol, golgi, plasma membrane	19.24	18.36
Solyc01g106360.2.1	Tomato	plastid	19.07	18.26
Solyc12g070080.1.1	Tomato	cytosol, plastid	4.3	16.78
Solyc10g086170.1.1	Tomato	cytosol	11.34	15.49
Solyc10g047300.1.1	Tomato	plastid	15.29	14.88
Solyc03g118690.2.1	Tomato	plastid	14.26	14.07
Solyc12g070090.1.1	Tomato	cytosol	4.64	12.5

Protein Annotations

EnsemblPlants:Solyc06g068690.2.1	EnsemblPlantsGene:Solyc06g068690.2	Gene3D:3.90.1300.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040
GO:GO:0016787	InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_dom	InterPro:IPR036928	KEGG:00970+6.3.5.7
PANTHER:PTHR11895	PANTHER:PTHR11895:SF73	PFAM:PF01425	SEG:seg	SUPFAM:SSF75304	UniParc:UPI000276658D
UniProt:K4C843	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6:+:42584427..42589315

Molecular Weight (calculated)

64153.2 Da

IEP (calculated)

5.450

GRAVY (calculated)

-0.293

Length

582 amino acids

Sequence
(BLAST)

001: MSTRVYSRDF TSSGKLGPKN CGEHLEQAKN EFPVCKCGFD MLDAGFFNDC KKLEIQKGAK DFNIPIIRSN RKLVATENGG LRDPSPLVFN SAWKSQEAKR
101: VTDKFNYSEC SGIQRPKNDE DIAFMSVLEL GQLFKEKLIT SEELTRIFLN RLKRYGPVLE SVITITEELA FQQAKEADQV LAKGKYLGPL HGIPYGLKDI
201: IAVPDYPTTW GSKSFKDQVI DVEAWVYKRL KSAGAILVAK LVSGSLAYDD IWFGGRTRNP WNIEEFSTGS SAGPASSTSA GLVPFAIGSE TVGSITYPAT
301: RCGVTALRPT FGAVGRTGVM SISESLDKLG PLCRTAADCA VVLDVIRGKD PDDLSSRDIM LGDPFSVDIT KLTVGYLEDA DKEVVGVLRS KGVNMVPFNL
401: DYTVDSAQGI VSFTMDVDML AHFDEWQRSN QDDEFEAQDQ WPLELRRARV ISAVDYIQAQ RSRSKLIQEV KENFTVDAFI GDSGDWEKVC VGNLVGMPVV
501: VVPTGFKKIS NASSDDTRRK TTITTGIYAP PDHDHVALAL AMAYQSLTNH HKQRPPIDDI GPNDSIPNPP TSTVPARQLR DY

Best Arabidopsis Sequence Match ( AT5G07360.3 )
(BLAST)

001: MARPSIATCD PSARPCLATR GSLPRSRTCA PLLFLCLLLG LTVFCADANP SDSKLLCSRL LPCEPSIEMV RNCKNLWKLL DRKVSVPCRK ITTLTRTVTL
101: TELPDKTMEA KCLQGMFELI DSAFFNETKL QEIAKGATEM NVPIYRANRK LVATKNGGLE NPSPLVFNPS WNREVQRVQD KRFKYPSASG VKLPRDEEDI
201: AFMSVLELGE LIKTRQITSK ELVRIYLKQL KRYNHVLEAV VTYTEELAYK QAKEADDLLS QGTYLGPLHG IPYGLKDIVA VPGYKTTWGS TSFKDQFLDI
301: EAWVYKRLKA SGAVLVAKLV TGSMAYDDIW FGGRTRNPWN IEEFSTGSSA GPAASTSAGM VPFAIGSETA GSMTYPAARC GITALRPTFG SVGRTGVMSI
401: SESLDKLGPF CRTAADCAVI LDAIKGKDPD DLSSREIAFE DPFSVDITKL TVGYTKDADM KVVEVLGSKG VNMVPFELNY TVESVQGILN FTMDVDMLAH
501: FDEWQRTGQE DLYEAQDQWP VELRRARVVT AVDYIQAQRA RGKLIREVEK SFTVDAFIGN VTDWEKVCMG NLVGLPVLVI PTGFKNITDP PTNSCRRRTT
601: INAGIYAPPE RDHIALALGM AYQSVTDAHR KRPPIDDLGP DDSIPNPPRA LIPPRRLHI

Arabidopsis Description

Amidase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6N3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.