Factsheet for GSMUA_Achr9P14860_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P11550_001
GSMUA_Achr3P29340_001
GSMUA_Achr8P01650_001
GSMUA_Achr9P21540_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09420.1	GSMUA_Achr10P...	AT3G20000.1	17981999
AT5G09420.1	GSMUA_Achr10P...	AT3G20000.1	17981999
AT5G09420.1	GSMUA_Achr10P...	AT3G20000.1	17981999
AT5G09420.1	GSMUA_Achr2P11550_001	AT3G20000.1	17981999
AT5G09420.1	GSMUA_Achr8P01650_001	AT3G20000.1	17981999
AT5G09420.1	GSMUA_Achr3P29340_001	AT3G54660.1	17981999
AT5G09420.1	GSMUA_Achr9P21540_001	AT3G54660.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g00300.t01	Wine grape	cytosol	63.72	65.4
KRH58262	Soybean	cytosol	28.73	64.39
Solyc10g047300.1.1	Tomato	plastid	60.19	62.71
TraesCS6D01G298000.1	Wheat	plastid	61.0	62.4
TraesCS6A01G318800.1	Wheat	plastid	61.0	62.4
TraesCS6B01G349000.1	Wheat	plastid	60.83	62.23
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	32.74	61.26
KRH10544	Soybean	golgi	58.59	61.04
KRH43896	Soybean	cytosol, endoplasmic reticulum	58.43	60.87
CDY21581	Canola	cytosol	58.11	60.03
KXG30729	Sorghum	plastid	59.07	59.93
Zm00001d018098_P005	Maize	plasma membrane	58.75	59.61
AT5G09420.1	Thale cress	cytosol	57.62	59.54
Os02t0754500-01	Rice	cytosol, mitochondrion, plastid	58.11	59.05
KRH58264	Soybean	golgi, plasma membrane	30.02	57.72
HORVU6Hr1G078210.1	Barley	mitochondrion	50.4	56.27
GSMUA_Achr1P21290_001	Banana	endoplasmic reticulum	47.83	50.34
GSMUA_Achr3P09030_001	Banana	cytosol, plasma membrane	32.42	48.33
Bra009383.1-P	Field mustard	cytosol, plastid	58.91	39.76
GSMUA_Achr9P09040_001	Banana	plastid	16.05	17.27
GSMUA_Achr4P18300_001	Banana	cytosol	10.43	16.33
GSMUA_Achr2P20550_001	Banana	mitochondrion	17.34	15.06
GSMUA_Achr4P18290_001	Banana	plastid	4.17	9.96

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:1.25.40.10	MapMan:23.2.1.7	Gene3D:3.90.1300.10	InterPro:AS_sf	InterPro:Amidase
InterPro:Amidase_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006626
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr9G14860_001	EnsemblPlants:GSMUA_Achr9P14860_001	EnsemblPlants:GSMUA_Achr9T14860_001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	InterPro:IPR036928	UniProt:M0U0E4	PFAM:PF01425	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR11895	PANTHER:PTHR11895:SF92	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF75304	TMHMM:TMhelix
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000295E4FD	SEG:seg	:

Description

Putative Glutamyl-tRNA(Gln) amidotransferase subunit A [Source:GMGC_GENE;Acc:GSMUA_Achr9G14860_001]

Coordinates

chr9:+:9727184..9740365

Molecular Weight (calculated)

68766.1 Da

IEP (calculated)

9.219

GRAVY (calculated)

-0.145

Length

623 amino acids

Sequence
(BLAST)

001: MELCKNWRRG RSSPPNGVKV WIVLGITVAG VLILAEATRR RRRMSRGVPR RVEFFGAFVE RFELAPSPQP PPPAARHPLA DLKFAVSDNF EIKGYVAGYG
101: NPDWKRTHEP ASQTVVVVSA LLERGATCVG RTVMDEFAFG VTGDNLHYGT PINPELPSLV PGGSSSGSAV AVAAELVDFA LGTDTIGGMR IPASFCGIFG
201: FKPSHGTISN IGVLTNSQSL DTIVPSLFTD LESVSGWFAR DPSILHCVGH ILLQASAMGP KRTRRFILAD DCFQILRVPK HKTVQVLGKA VENLSGYQPL
301: KHMNISQYIA TNVLSLKEFV KPSTKMQHGN STLRAISSAM VLLQRYEFKT NHEDWFNTTK PRIGIDISSQ VLAAVNSTQD NIKSLYKMRL ELRSALNKLL
401: KDDGILVIPT VTEFPFKRDS RKKMTPDIED HLHALLSIAG MSGCCQITVP LGKHESYPIS ISYIAAHGAD KFLLDTVLDM YSSLQEQITI ASNLVPTPDT
501: NGDMDASELW KEKGNAAYKG TQWNKAVSFY SEAIKLNNAN AIYYCNRAAA YLKLACFQQA EADCSQALLL DKKNVKAYLR RGTAREMLLC YKEALEDFKH
601: ALVLEPQNKD AVDAEKRLRK LMA

Best Arabidopsis Sequence Match ( AT5G09420.1 )
(BLAST)

001: MSNTLSLIQS NASNPKVWVV IGVTVAGIVI LAETRKRRIR ALREEDFGAF LDRFELLPFP PPPPPAAKQS LSGLTFSISD AFDVKDYITG FGCPQWKKTH
101: EAAEKTAVVV TTLLKNGATC VGKTIMDELG FGIIGENKHY GTPINPLMPD NVPGGCSSGS AVSVGAELVD FSLGIDTTGG VRVPAAFCGI LGFRPSQGTV
201: SSVGVLPNSQ SLETVGWFAS DPSVLCQVGH ALLNLSAVTH RRQRSLIFAD DLFELSDIPK QKSVQVVRKA IENLSGYKTP KHVNVGQYVA SNVPSLAEFC
301: EQSGKSQNSA STLRALSSVM LAIQRHEFKT NHEEWWQTCK SFLGPRFSND VVTALKSKNE SIKSLYRVKN EMRATIQSLL KEDGILVIPT VADPPPRLNT
401: KRNKSLNEFL DRTYALSCIA SMSGCCQVTI PLGEHGDRPI SVSLLTYYGG DKFLLDTTLD VYASLQDQAK LASNLAPVSD TNGNMEASEV MKEKGNAAYK
501: GKQWNKAVNF YTEAIKLNGA NATYYCNRAA AFLELCCFQQ AEQDCTKAML IDKKNVKAYL RRGTARESLV RYKEAAADFR HALVLEPQNK TAKVAEKRLR
601: KHI

Arabidopsis Description

OM64Outer envelope protein 64, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4KCL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.