Factsheet for GSMUA_Achr3P09030_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0128g00320.t01	Wine grape	cytosol	62.44	60.28
KRG92836	Soybean	cytosol	61.24	59.12
KRH33958	Soybean	cytosol	61.0	58.89
Os04t0118100-01	Rice	cytosol	60.77	58.39
EER97555	Sorghum	cytosol	59.81	57.21
Zm00001d006886_P002	Maize	cytosol	60.05	56.53
AT1G08980.1	Thale cress	cytosol	57.18	56.24
Os04t0117900-01	Rice	plasma membrane, plastid	57.89	55.76
TraesCS2B01G624200.1	Wheat	cytosol	58.85	54.67
TraesCS2D01G573300.1	Wheat	cytosol	58.61	54.57
Solyc10g086170.1.1	Tomato	cytosol	55.26	54.23
Bra031652.1-P	Field mustard	cytosol	54.55	54.16
CDY22653	Canola	cytosol	54.55	54.03
CDY06342	Canola	cytosol	54.55	54.03
TraesCS2A01G562400.1	Wheat	cytosol	58.85	53.95
PGSC0003DMT400093880	Potato	cytosol	55.5	53.7
CDY03602	Canola	cytosol, plastid	38.04	51.96
TraesCS2B01G603900.1	Wheat	cytosol	54.07	51.13
TraesCS2D01G573400.3	Wheat	cytosol, endoplasmic reticulum, peroxisome	52.87	51.04
TraesCS5D01G083700.1	Wheat	cytosol	35.89	49.83
HORVU6Hr1G060680.1	Barley	cytosol	18.9	49.69
GSMUA_Achr9P14860_001	Banana	mitochondrion	48.33	32.42
GSMUA_Achr1P21290_001	Banana	endoplasmic reticulum	45.45	32.09
GSMUA_Achr9P09040_001	Banana	plastid	20.81	15.03
GSMUA_Achr4P18300_001	Banana	cytosol	13.4	14.07
GSMUA_Achr4P18290_001	Banana	plastid	7.42	11.88
GSMUA_Achr2P20550_001	Banana	mitochondrion	20.33	11.86

Protein Annotations

KEGG:00970+6.3.5.7	MapMan:11.2.1.2.1	Gene3D:3.90.1300.10	InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_CS
InterPro:Amidase_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009684	GO:GO:0009851	GO:GO:0009987	GO:GO:0016787
GO:GO:0016810	GO:GO:0043864	EnsemblPlantsGene:GSMUA_Achr3G09030_001	EnsemblPlants:GSMUA_Achr3P09030_001	EnsemblPlants:GSMUA_Achr3T09030_001	InterPro:IPR036928
UniProt:M0SD20	PFAM:PF01425	ScanProsite:PS00571	PANTHER:PTHR11895	PANTHER:PTHR11895:SF111	SUPFAM:SSF75304
UniParc:UPI000296A72D	SEG:seg	:	:	:	:

Description

Putative Glutamyl-tRNA(Gln) amidotransferase subunit A [Source:GMGC_GENE;Acc:GSMUA_Achr3G09030_001]

Coordinates

chr3:-:6514301..6528265

Molecular Weight (calculated)

45204.9 Da

IEP (calculated)

4.921

GRAVY (calculated)

0.078

Length

418 amino acids

Sequence
(BLAST)

001: MQMNDMNFHI IQFKTDFCVL PLFDISGCVT GFGNPDWART HEAASSTSPV VLAAIGAGAT CVGKTVMDEM AYSINGENYH YGTPTNPCAP DRVPGGSSSG
101: SAVAVAANLA DFALGTDTGG SVRVPAAYCG IFGFRPSHGI ISATGVIPMA QSFDTVGWFA RDPITLTRVG QVLLQSSSDA TMPPKRFVIP EDCFQYLSSP
201: SDQISQILKK SVEEVFGCSI LHHENLGDHI YHNVPSLQNF ISSFSGDQAS TMPVLAALSH AMRLLQRFEF KTNHGDWLIS TKPTLGPGMF ERVSEVLNST
301: YEDLEYCYPV RAELQAFLST LLQDNGILAL PTIPGVPPKL NMEVDELDSF RARAFSLLSI AGMSGFCQIS IPLGMHDDLP VSVSLLAKHN ADHFLLDIVQ
401: TLYATLKEQA SIAWEHGN

Best Arabidopsis Sequence Match ( AT1G08980.1 )
(BLAST)

001: MATNNDFGAF IEKVTISPTS TSSSPPSLQG LTFAIKDIFD VEGRVTGFGN PDWLRTHSAA TSTAPVVSSL LEAGATALGI TIMDEMAYSI NGENAHYGTP
101: RNPIAFDRVP GGSSSGSAVA VAARLVDFSI GTDTGGSVRV PASYCGIFGF RPSHGAVSTV GLTPMAQSFD TVGWFARDTA TLKRVGCVLL QQHHLNPIEP
201: SQLIIADDCF KLCSVPHDLL VQPLVGSVEK SFGGNTVVKK VNLGEYIGQN VPSLKHFMTS DDVTTQQEFC IPSLMALSSS MRLLQRHEFK INHGAWISSV
301: KPEFGPGISE RIEEAIRTSD EKIDHCRSVK SELITALSTL LGEKGVLVIP TVPGPPPHLQ ANVAALESFR SRAFSLLSIA GVSGFCQVSI PLGLHENLPV
401: SVSLVAKYGS DGFLLSLVDS LAAFI

Arabidopsis Description

AMI1Amidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FR37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.