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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • cytosol 2
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
 cytosol: 27135507
plasma membrane: 27800704
gfp PMID: 27135507 doi
B Sánchez-Parra, H Frerigmann, MM Alonso, VC Loba, R Jost, M Hentrich, S Pollmann
Center for Plant Biotechnology and Genomics (U.P.M.-I.N.I.A.), Technical University Madrid, Montegancedo Campus, Crta. M-40, km 38, 28223 Pozuelo de Alarcón (Madrid), Spain. beatriz.sanchez@upm.es., Center for Plant Biotechnology and Genomics (U.P.M.-I.N.I.A.), Technical University Madrid, Montegancedo Campus, Crta. M-40, km 38, 28223 Pozuelo de Alarcón (Madrid), Spain. martamarina.perez@upm.es., Center for Plant Biotechnology and Genomics (U.P.M.-I.N.I.A.), Technical University Madrid, Montegancedo Campus, Crta. M-40, km 38, 28223 Pozuelo de Alarcón (Madrid), Spain. stephan.pollmann@upm.es., Center for Plant Biotechnology and Genomics (U.P.M.-I.N.I.A.), Technical University Madrid, Montegancedo Campus, Crta. M-40, km 38, 28223 Pozuelo de Alarcón (Madrid), Spain. victorcarrascoloba@gmail.com., Department of Plant Physiology, Faculty of Biology and Biotechnology, Ruhr-University Bochum, Universitätsstraße 150, 44801 Bochum, Germany. henning.frerigmann@uni-koeln.de., Department of Plant Physiology, Faculty of Biology and Biotechnology, Ruhr-University Bochum, Universitätsstraße 150, 44801 Bochum, Germany. mathias.hentrich@rub.de., School of Plant Biology, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia. ricarda.jost@uwa.edu.au.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os04t0117900-01 Rice plasma membrane, plastid 86.9 87.1
EER97555 Sorghum cytosol 78.16 77.8
Zm00001d006886_P002 Maize cytosol 78.39 76.8
TraesCS2D01G573300.1 Wheat cytosol 75.86 73.5
TraesCS2B01G624200.1 Wheat cytosol 74.94 72.44
TraesCS2A01G562400.1 Wheat cytosol 75.17 71.71
TraesCS2B01G603900.1 Wheat cytosol 69.66 68.55
TraesCS2D01G573400.3 Wheat cytosol, endoplasmic reticulum, peroxisome 65.52 65.82
TraesCS5D01G083700.1 Wheat cytosol 45.29 65.45
GSMUA_Achr3P09030_001 Banana cytosol, plasma membrane 58.39 60.77
VIT_14s0128g00320.t01 Wine grape cytosol 59.08 59.35
KRG92836 Soybean cytosol 59.08 59.35
Bra031652.1-P Field mustard cytosol 56.55 58.43
KRH33958 Soybean cytosol 58.16 58.43
CDY06342 Canola cytosol 56.55 58.29
CDY22653 Canola cytosol 56.09 57.82
AT1G08980.1 Thale cress cytosol 55.63 56.94
Solyc10g086170.1.1 Tomato cytosol 53.33 54.46
HORVU2Hr1G126540.1 Barley cytosol 42.53 54.41
CDY03602 Canola cytosol, plastid 35.4 50.33
Os03t0707900-01 Rice plasma membrane 43.68 32.42
Os02t0754500-01 Rice cytosol, mitochondrion, plastid 42.3 30.02
Os04t0643200-00 Rice plastid 21.84 17.79
Os12t0169000-00 Rice plasma membrane 22.07 16.19
Os04t0102700-01 Rice plasma membrane 20.23 14.47
Os11t0170000-01 Rice peroxisome 20.23 14.43
Os11t0536800-01 Rice golgi, plastid 17.47 11.36
Os02t0519900-01 Rice nucleus, plasma membrane, plastid 15.17 7.83
Os04t0118400-01 Rice extracellular 15.17 7.83
PGSC0003DMT400031298 Potato cytosol 0.92 2.5
Os04t0102600-01 Rice mitochondrion 0.23 0.49
Os11t0170200-01 Rice nucleus 0.23 0.11
Protein Annotations
KEGG:00970+6.3.5.7MapMan:11.2.1.2.1Gene3D:3.90.1300.10EntrezGene:4334958InterPro:AS_sfInterPro:Amidase
InterPro:Amidase_CSInterPro:Amidase_domProteinID:BAF13970.1ProteinID:BAS87628.1ProteinID:CAE01284.1GO:GO:0003674
GO:GO:0003824GO:GO:0004040GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005654GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009851
GO:GO:0009987GO:GO:0016787GO:GO:0043864InterPro:IPR036928EnsemblPlantsGene:Os04g0118100EnsemblPlants:Os04t0118100-01
PFAM:PF01425ScanProsite:PS00571PANTHER:PTHR11895PANTHER:PTHR11895:SF111UniProt:Q7XTK3SUPFAM:SSF75304
UniParc:UPI00001AE511RefSeq:XP_015635920.1SEG:seg:::
Description
AMI1Similar to H0613H07.3 protein. (Os04t0118100-01)
Coordinates
chr4:+:1073412..1076436
Molecular Weight (calculated)
46182.3 Da
IEP (calculated)
5.597
GRAVY (calculated)
0.091
Length
435 amino acids
Sequence
(BLAST)
001: MAMAGGGRGD YGAFMERFVL PPPPSQQLPL HGLTFAIKDI FDIAGRVTGF GNPDWARTHA PAAATSPVVL AALAAGATSL GTTIMDEMAY SINGENTHYG
101: TPTNPCAPGR VPGGSSSGSA VAVAANLVDF SLGTDTGGSV RVPAAYCGIF GLRPSHGLVS AENVIPMAQM FDTVGWFSRD LSTLSRVTKV LLPLPDDIVK
201: QPTQVTIPMD CFQILGSLDD RTYQIINASV AKRFDSQILD NRNLGDFISD NVPSIGKFIT DFSESELPSV PALSVISHVM RGLQRSQFKA NHAEWVNTVK
301: PNLGPGLRER ILEAIASGDN ESLEDFQAIR AEFKSALAAL LKDHGILAIP TVPGPPPKVG MEAAPLENFR ARAFSLLSIA GLSGFCQVSI PLGMRNGLPV
401: SVSLVARHGA DHFLLNVVEE LYQTLIDEAT KTWSS
Best Arabidopsis Sequence Match ( AT1G08980.1 )
(BLAST)
001: MATNNDFGAF IEKVTISPTS TSSSPPSLQG LTFAIKDIFD VEGRVTGFGN PDWLRTHSAA TSTAPVVSSL LEAGATALGI TIMDEMAYSI NGENAHYGTP
101: RNPIAFDRVP GGSSSGSAVA VAARLVDFSI GTDTGGSVRV PASYCGIFGF RPSHGAVSTV GLTPMAQSFD TVGWFARDTA TLKRVGCVLL QQHHLNPIEP
201: SQLIIADDCF KLCSVPHDLL VQPLVGSVEK SFGGNTVVKK VNLGEYIGQN VPSLKHFMTS DDVTTQQEFC IPSLMALSSS MRLLQRHEFK INHGAWISSV
301: KPEFGPGISE RIEEAIRTSD EKIDHCRSVK SELITALSTL LGEKGVLVIP TVPGPPPHLQ ANVAALESFR SRAFSLLSIA GVSGFCQVSI PLGLHENLPV
401: SVSLVAKYGS DGFLLSLVDS LAAFI
Arabidopsis Description
AMI1Amidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FR37]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.